JAL-2874 added filtering when a subtree is selected

[jalview.git] / src / jalview / ext / archaeopteryx / LoadedTreeSequenceAssociation.java

diff --git a/src/jalview/ext/archaeopteryx/LoadedTreeSequenceAssociation.java b/src/jalview/ext/archaeopteryx/LoadedTreeSequenceAssociation.java
index 86f27d1..0c83036 100644 (file)
--- a/src/jalview/ext/archaeopteryx/LoadedTreeSequenceAssociation.java
+++ b/src/jalview/ext/archaeopteryx/LoadedTreeSequenceAssociation.java
@@ -16,13 +16,13 @@ import org.forester.phylogeny.iterators.PhylogenyNodeIterator;
 public class LoadedTreeSequenceAssociation
         implements ExternalLoadedTreeAssociationI
 {
-  SequenceI[] alignSequences;
+  private SequenceI[] alignSequences;
 
-  Phylogeny tree;
+  private Phylogeny tree;
 
-  Map<SequenceI, PhylogenyNode> alignmentWithNodes;
+  private Map<SequenceI, PhylogenyNode> alignmentWithNodes;
 
-  Map<PhylogenyNode, SequenceI> nodesWithAlignment;
+  private Map<PhylogenyNode, SequenceI> nodesWithAlignment;
 
   public LoadedTreeSequenceAssociation(SequenceI[] alignmentSequences,
           Phylogeny aptxTree)