public CommandI sortAlignmentIn(AlignmentPanel alignPanel);
/**
- * This should be triggered when the user wants to sort the Jalview alignment
- * by the sequence order of the tree.
+ * Is triggered when the user wants to sort the Jalview alignment by the
+ * sequence order of the tree.
*/
public void sortByTree_actionPerformed();
/**
+ * Is triggered when the users wants to hide sequences in the Jalview
+ * alignment view that are part of a currently collapsed sub tree.
+ */
+ public void hideCollapsedSequences_actionPerformed();
+
+ /**
* If the nodes that should be matched have changed (different one selected by
* the user), this method notifies the Jalview alignment view that the
* matching sequences have changed as well.