+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.ext.varna;
-import fr.orsay.lri.varna.models.rna.RNA;
-
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.SequenceI;
+import fr.orsay.lri.varna.models.rna.RNA;
+
/**
* Data bean wrapping the data items that define one RNA view
*/
public final RNA rna;
- // path to a file holding VARNA session state XML
- public final String varnaSession;
-
public RnaModel(String t, AlignmentAnnotation aa, SequenceI s, RNA r,
- boolean g,
- String sessionFile)
+ boolean g)
{
title = t;
ann = aa;
seq = s;
- gapped = g;
rna = r;
- varnaSession = sessionFile;
+ gapped = g;
}
-}
\ No newline at end of file
+}