JAL-1953 2.11.2 with Archeopteryx!

[jalview.git] / src / jalview / fts / service / pdb / PDBFTSPanel.java

diff --git a/src/jalview/fts/service/pdb/PDBFTSPanel.java b/src/jalview/fts/service/pdb/PDBFTSPanel.java
index 90b6d06..0083971 100644 (file)
--- a/src/jalview/fts/service/pdb/PDBFTSPanel.java
+++ b/src/jalview/fts/service/pdb/PDBFTSPanel.java
@@ -26,6 +26,8 @@ import jalview.fts.api.FTSRestClientI;
 import jalview.fts.core.FTSRestRequest;
 import jalview.fts.core.FTSRestResponse;
 import jalview.fts.core.GFTSPanel;
+import jalview.gui.Help;
+import jalview.gui.Help.HelpId;
 import jalview.gui.SequenceFetcher;
 import jalview.util.MessageManager;
 
@@ -33,13 +35,15 @@ import java.util.HashMap;
 import java.util.HashSet;
 import java.util.Map;
 
+import javax.help.HelpSetException;
+
 @SuppressWarnings("serial")
 public class PDBFTSPanel extends GFTSPanel
 {
   private static String defaultFTSFrameTitle = MessageManager
           .getString("label.pdb_sequence_fetcher");
 
-  private static Map<String, Integer> tempUserPrefs = new HashMap<String, Integer>();
+  private static Map<String, Integer> tempUserPrefs = new HashMap<>();
 
   private static final String PDB_FTS_CACHE_KEY = "CACHE.PDB_FTS";
 
@@ -121,7 +125,8 @@ public class PDBFTSPanel extends GFTSPanel
 
           if (isPaginationEnabled() && resultSetCount > 0)
           {
-            String f1 = totalNumberformatter.format(Integer.valueOf(offSet + 1));
+            String f1 = totalNumberformatter
+                    .format(Integer.valueOf(offSet + 1));
             String f2 = totalNumberformatter
                     .format(Integer.valueOf(offSet + resultSetCount));
             String f3 = totalNumberformatter
@@ -188,7 +193,7 @@ public class PDBFTSPanel extends GFTSPanel
     // mainFrame.dispose();
     disableActionButtons();
     StringBuilder selectedIds = new StringBuilder();
-    HashSet<String> selectedIdsSet = new HashSet<String>();
+    HashSet<String> selectedIdsSet = new HashSet<>();
     int primaryKeyColIndex = 0;
     try
     {
@@ -219,7 +224,7 @@ public class PDBFTSPanel extends GFTSPanel
 
     String ids = selectedIds.toString();
     seqFetcher.setQuery(ids);
-    Thread worker = new Thread(seqFetcher);
+    Thread worker = new Thread(seqFetcher, "PDBFTSSeqFetcher");
     worker.start();
     delayAndEnableActionButtons();
   }
@@ -285,4 +290,16 @@ public class PDBFTSPanel extends GFTSPanel
   {
     return PDB_AUTOSEARCH;
   }
-}
\ No newline at end of file
+
+  @Override
+  protected void showHelp()
+  {
+    try
+    {
+      Help.showHelpWindow(HelpId.PdbFts);
+    } catch (HelpSetException e1)
+    {
+      e1.printStackTrace();
+    }
+  }
+}