Merge branch 'feature/JAL-3144noJTree' into

[jalview.git] / src / jalview / fts / service / uniprot / UniProtFTSRestClient.java

diff --git a/src/jalview/fts/service/uniprot/UniProtFTSRestClient.java b/src/jalview/fts/service/uniprot/UniProtFTSRestClient.java
index 6a54aa1..b4100cb 100644 (file)
--- a/src/jalview/fts/service/uniprot/UniProtFTSRestClient.java
+++ b/src/jalview/fts/service/uniprot/UniProtFTSRestClient.java
@@ -59,32 +59,32 @@ public class UniProtFTSRestClient extends FTSRestClient
   }
 
   @Override
-  public FTSRestResponse executeRequest(FTSRestRequest uniportRestRequest)
+  public FTSRestResponse executeRequest(FTSRestRequest uniprotRestRequest)
           throws Exception
   {
     try
     {
       String wantedFields = getDataColumnsFieldsAsCommaDelimitedString(
-              uniportRestRequest.getWantedFields());
-      int responseSize = (uniportRestRequest.getResponseSize() == 0)
+              uniprotRestRequest.getWantedFields());
+      int responseSize = (uniprotRestRequest.getResponseSize() == 0)
               ? getDefaultResponsePageSize()
-              : uniportRestRequest.getResponseSize();
+              : uniprotRestRequest.getResponseSize();
 
-      int offSet = uniportRestRequest.getOffSet();
+      int offSet = uniprotRestRequest.getOffSet();
       String query;
-      if (isAdvancedQuery(uniportRestRequest.getSearchTerm()))
+      if (isAdvancedQuery(uniprotRestRequest.getSearchTerm()))
       {
-        query = uniportRestRequest.getSearchTerm();
+        query = uniprotRestRequest.getSearchTerm();
       }
       else
       {
-        query = uniportRestRequest.getFieldToSearchBy()
+        query = uniprotRestRequest.getFieldToSearchBy()
                 .equalsIgnoreCase("Search All")
-                        ? uniportRestRequest.getSearchTerm()
+                        ? uniprotRestRequest.getSearchTerm()
                                 + " or mnemonic:"
-                                + uniportRestRequest.getSearchTerm()
-                        : uniportRestRequest.getFieldToSearchBy() + ":"
-                                + uniportRestRequest.getSearchTerm();
+                                + uniprotRestRequest.getSearchTerm()
+                        : uniprotRestRequest.getFieldToSearchBy() + ":"
+                                + uniprotRestRequest.getSearchTerm();
       }
 
       // BH 2018 the trick here is to coerce the classes in Javascript to be
@@ -92,8 +92,7 @@ public class UniProtFTSRestClient extends FTSRestClient
       // Java
       Client client;
       Class<ClientResponse> clientResponseClass;
-      if (/** @j2sNative true || */
-      false)
+      if (Jalview.isJS())
       {
         // JavaScript only -- coerce types to Java types for Java
         client = (Client) (Object) new jalview.javascript.web.Client();
@@ -135,7 +134,7 @@ public class UniProtFTSRestClient extends FTSRestClient
       clientResponse = null;
       client = null;
       return parseUniprotResponse(uniProtTabDelimittedResponseString,
-              uniportRestRequest, xTotalResults);
+              uniprotRestRequest, xTotalResults);
     } catch (Exception e)
     {
       String exceptionMsg = e.getMessage();