/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
Color textColour = Color.black;
Color textColour2 = Color.white;
- private boolean rightAlignIds = false;
private AnnotationColumnChooser annotationColumnSelectionState;
/**
setAlignment(al);
if (hiddenColumns != null)
{
- this.colSel = hiddenColumns;
- if (hiddenColumns.getHiddenColumns() != null
- && hiddenColumns.getHiddenColumns().size() > 0)
- {
- hasHiddenColumns = true;
- }
- else
- {
- hasHiddenColumns = false;
- }
+ colSel = hiddenColumns;
}
init();
}
setAlignment(al);
if (hiddenColumns != null)
{
- this.colSel = hiddenColumns;
- if (hiddenColumns.getHiddenColumns() != null
- && hiddenColumns.getHiddenColumns().size() > 0)
- {
- hasHiddenColumns = true;
- }
- else
- {
- hasHiddenColumns = false;
- }
+ colSel = hiddenColumns;
}
init();
}
shownpfeats = show;
}
- /**
- *
- * @return true if view has hidden rows
- */
- public boolean hasHiddenRows()
- {
- return hasHiddenRows;
- }
-
- /**
- *
- * @return true if view has hidden columns
- */
- public boolean hasHiddenColumns()
- {
- return hasHiddenColumns;
- }
/**
* when set, view will scroll to show the highlighted position
this.showAutocalculatedAbove = showAutocalculatedAbove;
}
-
- public boolean isShowAnnotation()
- {
- return super.isShowAnnotation();
- }
-
- public boolean isRightAlignIds()
- {
- return rightAlignIds;
- }
-
- public void setRightAlignIds(boolean rightAlignIds)
- {
- this.rightAlignIds = rightAlignIds;
- }
-
public AnnotationColumnChooser getAnnotationColumnSelectionState()
{
return annotationColumnSelectionState;