/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
import java.awt.*;
import java.awt.datatransfer.*;
import java.awt.event.*;
+import java.awt.geom.AffineTransform;
import java.awt.image.*;
import javax.swing.*;
addMouseListener(this);
addMouseMotionListener(this);
+ addMouseWheelListener(ap.annotationPanel);
}
public AnnotationLabels(AlignViewport av)
void getSelectedRow(int y)
{
int height = 0;
- AlignmentAnnotation[] aa = ap.av.getAlignment().getAlignmentAnnotation();
+ AlignmentAnnotation[] aa = ap.av.getAlignment()
+ .getAlignmentAnnotation();
selectedRow = -2;
if (aa != null)
{
*/
public void actionPerformed(ActionEvent evt)
{
- AlignmentAnnotation[] aa = ap.av.getAlignment().getAlignmentAnnotation();
+ AlignmentAnnotation[] aa = ap.av.getAlignment()
+ .getAlignmentAnnotation();
if (evt.getActionCommand().equals(ADDNEW))
{
ap.validateAnnotationDimensions(false);
ap.addNotify();
ap.repaint();
- //validate();
- //ap.paintAlignment(true);
+ // validate();
+ // ap.paintAlignment(true);
}
/**
{
end = ap.av.getAlignment().getAlignmentAnnotation().length - 1;
}
- AlignmentAnnotation endAA = ap.av.getAlignment().getAlignmentAnnotation()[end];
+ AlignmentAnnotation endAA = ap.av.getAlignment()
+ .getAlignmentAnnotation()[end];
ap.av.getAlignment().getAlignmentAnnotation()[end] = startAA;
ap.av.getAlignment().getAlignmentAnnotation()[start] = endAA;
if (selectedRow > -1
&& ap.av.getAlignment().getAlignmentAnnotation().length > selectedRow)
{
- AlignmentAnnotation aa = ap.av.getAlignment().getAlignmentAnnotation()[selectedRow];
-
+ AlignmentAnnotation aa = ap.av.getAlignment()
+ .getAlignmentAnnotation()[selectedRow];
+
StringBuffer desc = new StringBuffer();
if (aa.description != null
&& !aa.description.equals("New description"))
{
- // TODO: we could refactor and merge this code with the code in jalview.gui.SeqPanel.mouseMoved(..) that formats sequence feature tooltips
+ // TODO: we could refactor and merge this code with the code in
+ // jalview.gui.SeqPanel.mouseMoved(..) that formats sequence feature
+ // tooltips
desc.append(aa.getDescription(true).trim());
// check to see if the description is an html fragment.
- if (desc.length()<6 || (desc.substring(0,6).toLowerCase().indexOf("<html>")<0))
+ if (desc.length() < 6
+ || (desc.substring(0, 6).toLowerCase().indexOf("<html>") < 0))
{
// clean the description ready for embedding in html
- desc = new StringBuffer(Pattern.compile("<").matcher(desc).replaceAll("<"));
+ desc = new StringBuffer(Pattern.compile("<").matcher(desc)
+ .replaceAll("<"));
desc.insert(0, "<html>");
- } else {
- // remove terminating html if any
- int i=desc.substring(desc.length()-7).toLowerCase().lastIndexOf("</html>");
- if (i>-1) {
- desc.setLength(desc.length()-7+i);
- }
+ }
+ else
+ {
+ // remove terminating html if any
+ int i = desc.substring(desc.length() - 7).toLowerCase()
+ .lastIndexOf("</html>");
+ if (i > -1)
+ {
+ desc.setLength(desc.length() - 7 + i);
+ }
}
if (aa.hasScore())
{
desc.append("<br/>");
}
-
-
- } else {
+
+ }
+ else
+ {
// begin the tooltip's html fragment
desc.append("<html>");
}
if (aa.hasScore())
{
- // TODO: limit precision of score to avoid noise from imprecise doubles (64.7 becomes 64.7+/some tiny value).
+ // TODO: limit precision of score to avoid noise from imprecise doubles
+ // (64.7 becomes 64.7+/some tiny value).
desc.append(" Score: " + aa.score);
}
*/
public void mouseClicked(MouseEvent evt)
{
- AlignmentAnnotation[] aa = ap.av.getAlignment().getAlignmentAnnotation();
+ AlignmentAnnotation[] aa = ap.av.getAlignment()
+ .getAlignmentAnnotation();
if (SwingUtilities.isLeftMouseButton(evt))
{
if (selectedRow > -1 && selectedRow < aa.length)
{
if (evt.getClickCount() >= 2)
{
- // todo: make the ap scroll to the selection - not necessary, first click highlights/scrolls, second selects
+ // todo: make the ap scroll to the selection - not necessary, first
+ // click highlights/scrolls, second selects
ap.seqPanel.ap.idPanel.highlightSearchResults(null);
ap.av.setSelectionGroup(// new SequenceGroup(
aa[selectedRow].groupRef); // );
{
public void actionPerformed(ActionEvent e)
{
-
+
// TODO: pass on reference
// to ap
// so the
int x = 0;
int graphExtras = 0;
int offset = 0;
-
+ Font baseFont = g.getFont();
+ FontMetrics baseMetrics = fm;
+ int ofontH = fontHeight;
+ boolean visible = true;
if (aa != null)
{
hasHiddenRows = false;
for (int i = 0; i < aa.length; i++)
{
+ visible = true;
g.setColor(Color.black);
if (!aa[i].visible)
groupSize++;
}
}
-
if (groupSize * (fontHeight + 8) < aa[i].height)
{
graphExtras = (aa[i].height - (groupSize * (fontHeight + 8))) / 2;
}
-
- for (int gg = 0; gg < aa.length; gg++)
+ else
{
- if (aa[gg].graphGroup == aa[i].graphGroup)
+ // scale font to fit
+ float h = aa[i].height / (float) groupSize, s;
+ if (h < 9)
+ {
+ visible = false;
+ }
+ else
{
- x = width - fm.stringWidth(aa[gg].label) - 3;
- g.drawString(aa[gg].label, x, y - graphExtras);
- if (aa[gg].annotations[0] != null)
+ fontHeight = -8 + (int) h;
+ s = ((float) fontHeight) / (float) ofontH;
+ Font f = baseFont.deriveFont(AffineTransform
+ .getScaleInstance(s, s));
+ g.setFont(f);
+ fm = g.getFontMetrics();
+ graphExtras = (aa[i].height - (groupSize * (fontHeight + 8))) / 2;
+ }
+ }
+ if (visible)
+ {
+ for (int gg = 0; gg < aa.length; gg++)
+ {
+ if (aa[gg].graphGroup == aa[i].graphGroup)
{
- g.setColor(aa[gg].annotations[0].colour);
- }
+ x = width - fm.stringWidth(aa[gg].label) - 3;
+ g.drawString(aa[gg].label, x, y - graphExtras);
+
+ if (aa[gg]._linecolour != null)
+ {
- g.drawLine(x, y - graphExtras - 3,
- x + fm.stringWidth(aa[gg].label), y - graphExtras - 3);
+ g.setColor(aa[gg]._linecolour);
+ g.drawLine(x, y - graphExtras + 3,
+ x + fm.stringWidth(aa[gg].label), y - graphExtras
+ + 3);
+ }
- g.setColor(Color.black);
- graphExtras += fontHeight + 8;
+ g.setColor(Color.black);
+ graphExtras += fontHeight + 8;
+ }
}
}
+ g.setFont(baseFont);
+ fm = baseMetrics;
+ fontHeight = ofontH;
}
else
{
git://source.jalview.org / jalview.git / blobdiff