/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
if (profl != null)
{
- /*
- * if (profl != null) {
- *
- * for (int i = 0; i < profl.length; i++) { System.out.print(profl[i]
- * + ","); }
- *
- * }
- */
int ht = y1, htn = y2 - y1;// aa.graphHeight;
float wdth;
double ht2 = 0;
//TODO check what happens for group selections
return StructureFrequency.extractProfile(
aa.groupRef.consensusData[column], aa.groupRef
- .getIgnoreGapsConsensus(),column);
+ .getIgnoreGapsConsensus());
}
// TODO extend annotation row to enable dynamic and static profile data
// to
&& av.isShowSequenceLogo())
{
return StructureFrequency.extractProfile(av.hStrucConsensus[column],
- av.getIgnoreGapsConsensus(),column);
+ av.getIgnoreGapsConsensus());
}
}
-
}
return null;
}