awtAppClassNameField.setAccessible(true);
awtAppClassNameField.set(xToolkit, title);
} else {
- Cache.log.debug("XToolkit: awtAppClassName not found");
+ Cache.debug("XToolkit: awtAppClassName not found");
}
} catch (Exception e) {
Cache.debug("Error setting awtAppClassName");
new Thread(new Runnable() {
@Override
public void run() {
- Cache.log.debug("Filechooser init thread started.");
+ Cache.debug("Filechooser init thread started.");
String fileFormat = Cache.getProperty("DEFAULT_FILE_FORMAT");
JalviewFileChooser.forRead(Cache.getProperty("LAST_DIRECTORY"), fileFormat);
- Cache.log.debug("Filechooser init thread finished.");
+ Cache.debug("Filechooser init thread finished.");
}
}).start();
// Add the service change listener
@Override
public void propertyChange(PropertyChangeEvent evt) {
- Cache.log.debug("Firing service changed event for " + evt.getNewValue());
+ Cache.debug("Firing service changed event for " + evt.getNewValue());
JalviewServicesChanged(evt);
}
});
new Thread(new Runnable() {
@Override
public void run() {
- Cache.log.debug("Starting news thread.");
+ Cache.debug("Starting news thread.");
jvnews = new BlogReader(me);
showNews.setVisible(true);
- Cache.log.debug("Completed news thread.");
+ Cache.debug("Completed news thread.");
}
}).start();
}
new Thread(new Runnable() {
@Override
public void run() {
- Cache.log.debug("Downloading data from identifiers.org");
+ Cache.debug("Downloading data from identifiers.org");
try {
UrlDownloadClient.download(IdOrgSettings.getUrl(), IdOrgSettings.getDownloadLocation());
} catch (IOException e) {
- Cache.log.debug("Exception downloading identifiers.org data" + e.getMessage());
+ Cache.debug("Exception downloading identifiers.org data" + e.getMessage());
}
}
}).start();
}
void showNews(boolean visible) {
- Cache.log.debug((visible ? "Showing" : "Hiding") + " news.");
+ Cache.debug((visible ? "Showing" : "Hiding") + " news.");
showNews.setSelected(visible);
if (visible && !jvnews.isVisible()) {
new Thread(new Runnable() {
iy = (int) (iy * sh);
ih = (int) (ih * sh);
while (ix >= screenSize.width) {
- Cache.log.debug("Window geometry location recall error: shifting horizontal to within screenbounds.");
+ Cache.debug("Window geometry location recall error: shifting horizontal to within screenbounds.");
ix -= screenSize.width;
}
while (iy >= screenSize.height) {
- Cache.log.debug("Window geometry location recall error: shifting vertical to within screenbounds.");
+ Cache.debug("Window geometry location recall error: shifting vertical to within screenbounds.");
iy -= screenSize.height;
}
- Cache.log.debug("Got last known dimensions for " + windowName + ": x:" + ix + " y:" + iy + " width:" + iw
+ Cache.debug("Got last known dimensions for " + windowName + ": x:" + ix + " y:" + iy + " width:" + iw
+ " height:" + ih);
}
// return dimensions for new instance
frame.requestFocus();
} catch (java.beans.PropertyVetoException ve) {
} catch (java.lang.ClassCastException cex) {
- Cache.log.warn(
+ Cache.warn(
"Squashed a possible GUI implementation error. If you can recreate this, please look at https://issues.jalview.org/browse/JAL-869",
cex);
}
}
private void storeLastKnownDimensions(String string, Rectangle jc) {
- Cache.log.debug("Storing last known dimensions for " + string + ": x:" + jc.x + " y:" + jc.y + " width:" + jc.width
+ Cache.debug("Storing last known dimensions for " + string + ": x:" + jc.x + " y:" + jc.y + " width:" + jc.width
+ " height:" + jc.height);
Cache.setProperty(string + "SCREEN_X", jc.x + "");
@Override
protected void garbageCollect_actionPerformed(ActionEvent e) {
// We simply collect the garbage
- Cache.log.debug("Collecting garbage...");
+ Cache.debug("Collecting garbage...");
System.gc();
- Cache.log.debug("Finished garbage collection.");
+ Cache.debug("Finished garbage collection.");
}
/*
} catch (OutOfMemoryError oom) {
new OOMWarning("Whilst saving current state to " + chosenFile.getName(), oom);
} catch (Exception ex) {
- Cache.log.error("Problems whilst trying to save to " + chosenFile.getName(), ex);
+ Cache.error("Problems whilst trying to save to " + chosenFile.getName(), ex);
JvOptionPane.showMessageDialog(me,
MessageManager.formatMessage("label.error_whilst_saving_current_state_to",
new Object[] { chosenFile.getName() }),
} catch (OutOfMemoryError oom) {
new OOMWarning("Whilst loading project from " + choice, oom);
} catch (Exception ex) {
- Cache.log.error("Problems whilst loading project from " + choice, ex);
+ Cache.error("Problems whilst loading project from " + choice, ex);
JvOptionPane.showMessageDialog(Desktop.desktop,
MessageManager.formatMessage("label.error_whilst_loading_project_from", new Object[] { choice }),
MessageManager.getString("label.couldnt_load_project"), JvOptionPane.WARNING_MESSAGE);
try {
openGroovyConsole();
} catch (Exception ex) {
- Cache.log.error("Groovy Shell Creation failed.", ex);
+ Cache.error("Groovy Shell Creation failed.", ex);
JvOptionPane.showInternalMessageDialog(Desktop.desktop,
MessageManager.getString("label.couldnt_create_groovy_shell"),
});
}
} else {
- Cache.log.error("Errors reported by JABA discovery service. Check web services preferences.\n" + ermsg);
+ Cache.error("Errors reported by JABA discovery service. Check web services preferences.\n" + ermsg);
}
}
}
Desktop.showUrl(url);
} catch (Exception x) {
if (url != null) {
- if (Cache.log != null) {
- Cache.log.error("Couldn't handle string " + url + " as a URL.");
- } else {
- System.err.println("Couldn't handle string " + url + " as a URL.");
- }
+ Cache.error("Couldn't handle string " + url + " as a URL.");
}
// ignore any exceptions due to dud links.
}
try {
SwingUtilities.invokeAndWait(prompter);
} catch (Exception q) {
- Cache.log.warn("Unexpected Exception in dialog thread.", q);
+ Cache.warn("Unexpected Exception in dialog thread.", q);
}
}
});
@Override
public void exportImage(Graphics g) throws Exception {
paintAll(g);
- Cache.log.info("Successfully written snapshot to file " + of.getAbsolutePath());
+ Cache.info("Successfully written snapshot to file " + of.getAbsolutePath());
}
};
String title = "View of desktop";
try {
urlFlavour = new DataFlavor("application/x-java-url; class=java.net.URL");
} catch (ClassNotFoundException cfe) {
- Cache.log.debug("Couldn't instantiate the URL dataflavor.", cfe);
+ Cache.debug("Couldn't instantiate the URL dataflavor.", cfe);
}
if (urlFlavour != null && t.isDataFlavorSupported(urlFlavour)) {
if (url != null) {
protocols.add(DataSourceType.URL);
files.add(url.toString());
- Cache.log.debug("Drop handled as URL dataflavor " + files.get(files.size() - 1));
+ Cache.debug("Drop handled as URL dataflavor " + files.get(files.size() - 1));
return;
} else {
if (Platform.isAMacAndNotJS()) {
}
}
} catch (Throwable ex) {
- Cache.log.debug("URL drop handler failed.", ex);
+ Cache.debug("URL drop handler failed.", ex);
}
}
if (t.isDataFlavorSupported(DataFlavor.javaFileListFlavor)) {
// Works on Windows and MacOSX
- Cache.log.debug("Drop handled as javaFileListFlavor");
+ Cache.debug("Drop handled as javaFileListFlavor");
for (Object file : (List) t.getTransferData(DataFlavor.javaFileListFlavor)) {
files.add(file);
protocols.add(DataSourceType.FILE);
boolean added = false;
String data = null;
if (t.isDataFlavorSupported(uriListFlavor)) {
- Cache.log.debug("Drop handled as uriListFlavor");
+ Cache.debug("Drop handled as uriListFlavor");
// This is used by Unix drag system
data = (String) t.getTransferData(uriListFlavor);
}
if (data == null) {
// fallback to text: workaround - on OSX where there's a JVM bug
- Cache.log.debug("standard URIListFlavor failed. Trying text");
+ Cache.debug("standard URIListFlavor failed. Trying text");
// try text fallback
DataFlavor textDf = new DataFlavor("text/plain;class=java.lang.String");
if (t.isDataFlavorSupported(textDf)) {
data = (String) t.getTransferData(textDf);
}
- Cache.log.debug("Plain text drop content returned " + (data == null ? "Null - failed" : data));
+ Cache.debug("Plain text drop content returned " + (data == null ? "Null - failed" : data));
}
if (data != null) {
while (protocols.size() < files.size()) {
- Cache.log.debug("Adding missing FILE protocol for " + files.get(protocols.size()));
+ Cache.debug("Adding missing FILE protocol for " + files.get(protocols.size()));
protocols.add(DataSourceType.FILE);
}
for (java.util.StringTokenizer st = new java.util.StringTokenizer(data, "\r\n"); st.hasMoreTokens();) {
}
}
- if (Cache.log.isDebugEnabled()) {
+ if (Cache.isDebugEnabled()) {
if (data == null || !added) {
if (t.getTransferDataFlavors() != null && t.getTransferDataFlavors().length > 0) {
- Cache.log.debug("Couldn't resolve drop data. Here are the supported flavors:");
+ Cache.debug("Couldn't resolve drop data. Here are the supported flavors:");
for (DataFlavor fl : t.getTransferDataFlavors()) {
- Cache.log.debug("Supported transfer dataflavor: " + fl.toString());
+ Cache.debug("Supported transfer dataflavor: " + fl.toString());
Object df = t.getTransferData(fl);
if (df != null) {
- Cache.log.debug("Retrieves: " + df);
+ Cache.debug("Retrieves: " + df);
} else {
- Cache.log.debug("Retrieved nothing");
+ Cache.debug("Retrieved nothing");
}
}
} else {
- Cache.log.debug("Couldn't resolve dataflavor for drop: " + t.toString());
+ Cache.debug("Couldn't resolve dataflavor for drop: " + t.toString());
}
}
}
}
if (Platform.isWindowsAndNotJS()) {
- Cache.log.debug("Scanning dropped content for Windows Link Files");
+ Cache.debug("Scanning dropped content for Windows Link Files");
// resolve any .lnk files in the file drop
for (int f = 0; f < files.size(); f++) {
Object obj = files.get(f);
File lf = (obj instanceof File ? (File) obj : new File((String) obj));
// process link file to get a URL
- Cache.log.debug("Found potential link file: " + lf);
+ Cache.debug("Found potential link file: " + lf);
WindowsShortcut wscfile = new WindowsShortcut(lf);
String fullname = wscfile.getRealFilename();
protocols.set(f, FormatAdapter.checkProtocol(fullname));
files.set(f, fullname);
- Cache.log.debug("Parsed real filename " + fullname + " to extract protocol: " + protocols.get(f));
+ Cache.debug("Parsed real filename " + fullname + " to extract protocol: " + protocols.get(f));
} catch (Exception ex) {
- Cache.log.error("Couldn't parse " + files.get(f) + " as a link file.", ex);
+ Cache.error("Couldn't parse " + files.get(f) + " as a link file.", ex);
}
}
}
git://source.jalview.org / jalview.git / blobdiff