JAL-3141 Reformatted code in eclipse

[jalview.git] / src / jalview / gui / Desktop.java

diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java
index 1a1fa45..e9b08a7 100644 (file)
--- a/src/jalview/gui/Desktop.java
+++ b/src/jalview/gui/Desktop.java
@@ -365,13 +365,12 @@ public class Desktop extends jalview.jbgui.GDesktop
 
     // This line prevents Windows Look&Feel resizing all new windows to maximum
     // if previous window was maximised
-    desktop.setDesktopManager(
-            new MyDesktopManager(
-                    (Platform.isWindows() ? new DefaultDesktopManager()
-                            : Platform.isAMac()
-                                    ? new AquaInternalFrameManager(
-                                            desktop.getDesktopManager())
-                                    : desktop.getDesktopManager())));
+    desktop.setDesktopManager(new MyDesktopManager(
+            (Platform.isWindows() ? new DefaultDesktopManager()
+                    : Platform.isAMac()
+                            ? new AquaInternalFrameManager(
+                                    desktop.getDesktopManager())
+                            : desktop.getDesktopManager())));
 
     Rectangle dims = getLastKnownDimensions("");
     if (dims != null)
@@ -1614,9 +1613,12 @@ public class Desktop extends jalview.jbgui.GDesktop
   {
     java.io.File projectFile = getProjectFile();
     // autoSave indicates we already have a file and don't need to ask
-    boolean autoSave = projectFile != null && !saveAs && BackupFiles.getEnabled();
+    boolean autoSave = projectFile != null && !saveAs
+            && BackupFiles.getEnabled();
 
-    //System.out.println("autoSave="+autoSave+", projectFile='"+projectFile+"', saveAs="+saveAs+", Backups "+(BackupFiles.getEnabled()?"enabled":"disabled"));
+    // System.out.println("autoSave="+autoSave+", projectFile='"+projectFile+"',
+    // saveAs="+saveAs+", Backups
+    // "+(BackupFiles.getEnabled()?"enabled":"disabled"));
 
     boolean approveSave = false;
     if (!autoSave)
@@ -1637,7 +1639,8 @@ public class Desktop extends jalview.jbgui.GDesktop
       }
     }
 
-    if (approveSave || autoSave) {
+    if (approveSave || autoSave)
+    {
       final Desktop me = this;
       final java.io.File chosenFile = projectFile;
       new Thread(new Runnable()
@@ -1663,14 +1666,12 @@ public class Desktop extends jalview.jbgui.GDesktop
             backupfiles.rollBackupsAndRenameTempFile();
           } catch (OutOfMemoryError oom)
           {
-            new OOMWarning(
-                    "Whilst saving current state to " + chosenFile.getName(),
-                    oom);
+            new OOMWarning("Whilst saving current state to "
+                    + chosenFile.getName(), oom);
           } catch (Exception ex)
           {
-            Cache.log.error(
-                    "Problems whilst trying to save to " + chosenFile.getName(),
-                    ex);
+            Cache.log.error("Problems whilst trying to save to "
+                    + chosenFile.getName(), ex);
             JvOptionPane.showMessageDialog(me,
                     MessageManager.formatMessage(
                             "label.error_whilst_saving_current_state_to",
@@ -1712,8 +1713,7 @@ public class Desktop extends jalview.jbgui.GDesktop
     final String[] desc = new String[] { "Jalview Project",
         "Jalview Project (old)" };
     JalviewFileChooser chooser = new JalviewFileChooser(
-            Cache.getProperty("LAST_DIRECTORY"), suffix,
-            desc,
+            Cache.getProperty("LAST_DIRECTORY"), suffix, desc,
             "Jalview Project");
     chooser.setFileView(new JalviewFileView());
     chooser.setDialogTitle(MessageManager.getString("label.restore_state"));
@@ -2564,7 +2564,6 @@ public class Desktop extends jalview.jbgui.GDesktop
     }
   }
 
-
   /**
    * Accessor method to quickly get all the AlignmentFrames loaded.
    * 
@@ -3402,15 +3401,15 @@ public class Desktop extends jalview.jbgui.GDesktop
 
       try
       {
-      java.net.URL url = (URL) t.getTransferData(urlFlavour);
+        java.net.URL url = (URL) t.getTransferData(urlFlavour);
         // nb: java 8 osx bug https://bugs.openjdk.java.net/browse/JDK-8156099
         // means url may be null.
-      if (url != null)
-      {
-        protocols.add(DataSourceType.URL);
-        files.add(url.toString());
-        Cache.log.debug("Drop handled as URL dataflavor "
-                + files.get(files.size() - 1));
+        if (url != null)
+        {
+          protocols.add(DataSourceType.URL);
+          files.add(url.toString());
+          Cache.log.debug("Drop handled as URL dataflavor "
+                  + files.get(files.size() - 1));
           return;
         }
         else
@@ -3421,7 +3420,7 @@ public class Desktop extends jalview.jbgui.GDesktop
                     "Please ignore plist error - occurs due to problem with java 8 on OSX");
           }
           ;
-      }
+        }
       } catch (Throwable ex)
       {
         Cache.log.debug("URL drop handler failed.", ex);
@@ -3545,7 +3544,8 @@ public class Desktop extends jalview.jbgui.GDesktop
                 && (source.endsWith(".lnk") || source.endsWith(".url")
                         || source.endsWith(".site")))
         {
-          try {
+          try
+          {
             File lf = new File(files.get(f));
             // process link file to get a URL
             Cache.log.debug("Found potential link file: " + lf);
@@ -3555,10 +3555,11 @@ public class Desktop extends jalview.jbgui.GDesktop
             files.set(f, fullname);
             Cache.log.debug("Parsed real filename " + fullname
                     + " to extract protocol: " + protocols.get(f));
-          }
-          catch (Exception ex)
+          } catch (Exception ex)
           {
-            Cache.log.error("Couldn't parse "+files.get(f)+" as a link file.",ex);
+            Cache.log.error(
+                    "Couldn't parse " + files.get(f) + " as a link file.",
+                    ex);
           }
         }
       }