/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.gui;
import java.util.*;
-import java.awt.*;
import java.awt.event.*;
import javax.swing.*;
// TODO: add switches to control what is searched - sequences, IDS,
// descriptions, features
jalview.analysis.Finder finder = new jalview.analysis.Finder(
- av.alignment, av.getSelectionGroup(), seqIndex, resIndex);
+ av.getAlignment(), av.getSelectionGroup(), seqIndex, resIndex);
finder.setCaseSensitive(caseSensitive.isSelected());
finder.setFindAll(findAll);
{
String message = (idMatch.size() > 0) ? "" + idMatch.size() + " IDs"
: "";
- if (idMatch.size() > 0 && searchResults.getSize() > 0)
+ if (searchResults != null)
{
- message += " and ";
+ if (idMatch.size() > 0 && searchResults.getSize() > 0)
+ {
+ message += " and ";
+ }
+ message += searchResults.getSize() + " subsequence matches found.";
}
- message += searchResults.getSize() + " subsequence matches found.";
JOptionPane.showInternalMessageDialog(this, message, null,
JOptionPane.INFORMATION_MESSAGE);
resIndex = -1;