JAL-2316 Changes following review.

[jalview.git] / src / jalview / gui / IdPanel.java

diff --git a/src/jalview/gui/IdPanel.java b/src/jalview/gui/IdPanel.java
index e326a7a..6ae19f0 100755 (executable)
--- a/src/jalview/gui/IdPanel.java
+++ b/src/jalview/gui/IdPanel.java
@@ -36,9 +36,7 @@ import java.awt.event.MouseMotionListener;
 import java.awt.event.MouseWheelEvent;
 import java.awt.event.MouseWheelListener;
 import java.util.List;
-import java.util.Vector;
 
-import javax.swing.JOptionPane;
 import javax.swing.JPanel;
 import javax.swing.SwingUtilities;
 import javax.swing.ToolTipManager;
@@ -200,7 +198,7 @@ public class IdPanel extends JPanel implements MouseListener,
 
     int seq = alignPanel.getSeqPanel().findSeq(e);
     String id = av.getAlignment().getSequenceAt(seq).getName();
-    String url = Preferences.sequenceUrlLinks.getDefaultUrl(id);
+    String url = Preferences.sequenceUrlLinks.getPrimaryUrl(id);
 
     try
     {
@@ -328,7 +326,7 @@ public class IdPanel extends JPanel implements MouseListener,
     Sequence sq = (Sequence) av.getAlignment().getSequenceAt(seq2);
     // build a new links menu based on the current links + any non-positional
     // features
-    Vector<String> nlinks = Preferences.sequenceUrlLinks.getLinksForMenu();
+    List<String> nlinks = Preferences.sequenceUrlLinks.getLinksForMenu();
     SequenceFeature sfs[] = sq == null ? null : sq.getSequenceFeatures();
     if (sfs != null)
     {
@@ -340,7 +338,7 @@ public class IdPanel extends JPanel implements MouseListener,
           {
             for (int l = 0, lSize = sf.links.size(); l < lSize; l++)
             {
-              nlinks.addElement(sf.links.elementAt(l));
+              nlinks.add(sf.links.elementAt(l));
             }
           }
         }