Recalc accelerated

[jalview.git] / src / jalview / gui / Jalview2XML.java

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index b8977c5..51bf824 100755 (executable)
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -580,21 +580,24 @@ public class Jalview2XML
           }\r
         }\r
 \r
+        Vector seqs = new Vector();\r
+        int[] ids = groups[i].getSeq();\r
+\r
+        for (int s = 0; s < ids.length; s++)\r
+        {\r
+          seqs.addElement( (jalview.datamodel.SequenceI) seqids.elementAt(\r
+              ids[s]));\r
+        }\r
+\r
         jalview.datamodel.SequenceGroup sg = new jalview.datamodel.\r
-            SequenceGroup(groups[i].getName(),\r
+            SequenceGroup(seqs, groups[i].getName(),\r
                           cs, groups[i].getDisplayBoxes(),\r
                           groups[i].getDisplayText(), groups[i].getColourText(),\r
                           groups[i].getStart(), groups[i].getEnd());\r
+\r
         sg.setOutlineColour(new java.awt.Color(\r
             groups[i].getOutlineColour()));\r
 \r
-        int[] ids = groups[i].getSeq();\r
-\r
-        for (int s = 0; s < ids.length; s++)\r
-        {\r
-          sg.addSequence( (jalview.datamodel.SequenceI) seqids.elementAt(\r
-              ids[s]));\r
-        }\r
 \r
         if (groups[i].getConsThreshold() != 0)\r
         {\r