JAL-1114 - refactor methods handling Vectors and Hashtables to Lists and Maps, and...

[jalview.git] / src / jalview / gui / Jalview2XML.java

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 6d55c32..52f66e8 100644 (file)
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -927,13 +927,11 @@ public class Jalview2XML
     if (jal.getGroups() != null)
     {
       JGroup[] groups = new JGroup[jal.getGroups().size()];
-
-      for (int i = 0; i < groups.length; i++)
+      int i = -1;
+      for (jalview.datamodel.SequenceGroup sg:jal.getGroups())
       {
-        groups[i] = new JGroup();
+        groups[++i] = new JGroup();
 
-        jalview.datamodel.SequenceGroup sg = (jalview.datamodel.SequenceGroup) jal
-                .getGroups().elementAt(i);
         groups[i].setStart(sg.getStartRes());
         groups[i].setEnd(sg.getEndRes());
         groups[i].setName(sg.getName());