JAL-2527 Wired up cached values to overview

[jalview.git] / src / jalview / gui / OverviewPanel.java

diff --git a/src/jalview/gui/OverviewPanel.java b/src/jalview/gui/OverviewPanel.java
index 28de801..d66bbf0 100755 (executable)
--- a/src/jalview/gui/OverviewPanel.java
+++ b/src/jalview/gui/OverviewPanel.java
@@ -20,6 +20,7 @@
  */
 package jalview.gui;
 
+import jalview.bin.Cache;
 import jalview.util.MessageManager;
 import jalview.util.Platform;
 import jalview.viewmodel.OverviewDimensions;
@@ -79,9 +80,19 @@ public class OverviewPanel extends JPanel
     this.av = alPanel.av;
     this.ap = alPanel;
 
-    od = new OverviewDimensionsShowHidden(av.getRanges(),
+    showHidden = Cache.getDefault("SHOW_OV_HIDDEN_AT_START", true);
+    if (showHidden)
+    {
+      od = new OverviewDimensionsShowHidden(av.getRanges(),
             (av.isShowAnnotation()
                     && av.getAlignmentConservationAnnotation() != null));
+    }
+    else
+    {
+      od = new OverviewDimensionsHideHidden(av.getRanges(),
+              (av.isShowAnnotation()
+                      && av.getAlignmentConservationAnnotation() != null));
+    }
 
     setSize(od.getWidth(), od.getHeight());
 
@@ -158,7 +169,6 @@ public class OverviewPanel extends JPanel
           }
         }
         else
-        // if (!av.getWrapAlignment())
         {
           if (!od.isPositionInBox(evt.getX(), evt.getY()))
           {