sequences are private in SequenceGroup

[jalview.git] / src / jalview / gui / PCAPanel.java

diff --git a/src/jalview/gui/PCAPanel.java b/src/jalview/gui/PCAPanel.java
index e680dde..64253b4 100755 (executable)
--- a/src/jalview/gui/PCAPanel.java
+++ b/src/jalview/gui/PCAPanel.java
@@ -59,11 +59,11 @@ public class PCAPanel extends GPCAPanel implements Runnable
         boolean sameLength = true;\r
 \r
         if ((av.getSelectionGroup() != null) &&\r
-                (av.getSelectionGroup().getSize() > 3))\r
+                (av.getSelectionGroup().getSize(false) > 3))\r
         {\r
-            seqs = new Sequence[av.getSelectionGroup().getSize()];\r
+            seqs = new Sequence[av.getSelectionGroup().getSize(false)];\r
             int length = av.getSelectionGroup().getSequenceAt(0).getLength();\r
-            for (int i = 0; i < av.getSelectionGroup().getSize(); i++)\r
+            for (int i = 0; i < av.getSelectionGroup().getSize(false); i++)\r
             {\r
                 seqs[i] = av.getSelectionGroup().getSequenceAt(i);\r
                 if(seqs[i].getLength()!=length)\r