-package jalview.gui;\r
-import java.awt.*;\r
-import java.util.*;\r
-\r
-public class PaintRefresher\r
-{\r
- static Vector containers = new Vector();\r
-\r
- public static void Register(Container c)\r
- {\r
- if(!containers.contains(c))\r
- containers.add(c);\r
- else\r
- containers.remove(c);\r
- }\r
-\r
- public static void Refresh(Container c)\r
- {\r
- Container temp;\r
- Enumeration e = containers.elements();\r
- while( e.hasMoreElements() )\r
- {\r
- temp = (Container)e.nextElement();\r
-\r
- if(!temp.isValid())\r
- containers.removeElement( temp );\r
- else if( temp == c )\r
- continue;\r
-\r
- temp.repaint();\r
- }\r
-\r
- }\r
-\r
-}\r
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ */
+package jalview.gui;
+
+import java.util.*;
+
+import java.awt.*;
+
+import jalview.datamodel.*;
+
+/**
+ * DOCUMENT ME!
+ *
+ * @author $author$
+ * @version $Revision$
+ */
+public class PaintRefresher
+{
+ static Hashtable components;
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @param comp
+ * DOCUMENT ME!
+ * @param al
+ * DOCUMENT ME!
+ */
+ public static void Register(Component comp, String seqSetId)
+ {
+ if (components == null)
+ {
+ components = new Hashtable();
+ }
+
+ if (components.containsKey(seqSetId))
+ {
+ Vector comps = (Vector) components.get(seqSetId);
+ if (!comps.contains(comp))
+ {
+ comps.addElement(comp);
+ }
+ }
+ else
+ {
+ Vector vcoms = new Vector();
+ vcoms.addElement(comp);
+ components.put(seqSetId, vcoms);
+ }
+ }
+
+ public static void RemoveComponent(Component comp)
+ {
+ if (components == null)
+ {
+ return;
+ }
+
+ Enumeration en = components.keys();
+ while (en.hasMoreElements())
+ {
+ String id = en.nextElement().toString();
+ Vector comps = (Vector) components.get(id);
+ comps.remove(comp);
+ if (comps.size() == 0)
+ {
+ components.remove(id);
+ }
+ }
+ }
+
+ public static void Refresh(Component source, String id)
+ {
+ Refresh(source, id, false, false);
+ }
+
+ public static void Refresh(Component source, String id,
+ boolean alignmentChanged, boolean validateSequences)
+ {
+ if (components == null)
+ {
+ return;
+ }
+
+ Component comp;
+ Vector comps = (Vector) components.get(id);
+
+ if (comps == null)
+ {
+ return;
+ }
+
+ Enumeration e = comps.elements();
+ while (e.hasMoreElements())
+ {
+ comp = (Component) e.nextElement();
+
+ if (comp == source)
+ {
+ continue;
+ }
+
+ if (validateSequences && comp instanceof AlignmentPanel
+ && source instanceof AlignmentPanel)
+ {
+ validateSequences(((AlignmentPanel) source).av.alignment,
+ ((AlignmentPanel) comp).av.alignment);
+ }
+
+ if (comp instanceof AlignmentPanel && alignmentChanged)
+ {
+ ((AlignmentPanel) comp).alignmentChanged();
+ }
+
+ comp.repaint();
+ }
+ }
+
+ static void validateSequences(AlignmentI source, AlignmentI comp)
+ {
+ SequenceI[] a1;
+ if (source.getHiddenSequences().getSize() > 0)
+ {
+ a1 = source.getHiddenSequences().getFullAlignment()
+ .getSequencesArray();
+ }
+ else
+ {
+ a1 = source.getSequencesArray();
+ }
+
+ SequenceI[] a2;
+ if (comp.getHiddenSequences().getSize() > 0)
+ {
+ a2 = comp.getHiddenSequences().getFullAlignment().getSequencesArray();
+ }
+ else
+ {
+ a2 = comp.getSequencesArray();
+ }
+
+ int i, iSize = a1.length, j, jSize = a2.length;
+
+ if (iSize == jSize)
+ {
+ return;
+ }
+
+ boolean exists = false;
+ for (i = 0; i < iSize; i++)
+ {
+ exists = false;
+
+ for (j = 0; j < jSize; j++)
+ {
+ if (a2[j] == a1[i])
+ {
+ exists = true;
+ break;
+ }
+ }
+
+ if (!exists)
+ {
+ if (i < comp.getHeight())
+ {
+ comp.getSequences().insertElementAt(a1[i], i);
+ }
+ else
+ {
+ comp.addSequence(a1[i]);
+ }
+
+ if (comp.getHiddenSequences().getSize() > 0)
+ {
+ a2 = comp.getHiddenSequences().getFullAlignment()
+ .getSequencesArray();
+ }
+ else
+ {
+ a2 = comp.getSequencesArray();
+ }
+
+ jSize = a2.length;
+ }
+ }
+
+ iSize = a1.length;
+ jSize = a2.length;
+
+ for (j = 0; j < jSize; j++)
+ {
+ exists = false;
+ for (i = 0; i < iSize; i++)
+ {
+ if (a2[j] == a1[i])
+ {
+ exists = true;
+ break;
+ }
+ }
+
+ if (!exists)
+ {
+ comp.deleteSequence(a2[j]);
+ }
+ }
+ }
+
+ static AlignmentPanel[] getAssociatedPanels(String id)
+ {
+ if (components==null) { return new AlignmentPanel[0]; };
+ Vector comps = (Vector) components.get(id);
+ if (comps==null) { return new AlignmentPanel[0]; };
+ Vector tmp = new Vector();
+ int i, iSize = comps.size();
+ for (i = 0; i < iSize; i++)
+ {
+ if (comps.elementAt(i) instanceof AlignmentPanel)
+ {
+ tmp.addElement(((AlignmentPanel) comps.elementAt(i)));
+ }
+ }
+ AlignmentPanel[] result = new AlignmentPanel[tmp.size()];
+ tmp.toArray(result);
+
+ return result;
+ }
+
+}
git://source.jalview.org / jalview.git / blobdiff