/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*/
package jalview.gui;
-import java.util.*;
-import java.util.List;
-
-import java.awt.*;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.SequenceI;
-import jalview.datamodel.*;
+import java.awt.Component;
+import java.util.ArrayList;
+import java.util.HashMap;
+import java.util.Iterator;
+import java.util.List;
+import java.util.Map;
/**
* Route datamodel/view update events for a sequence set to any display
*/
public class PaintRefresher
{
- static Hashtable components;
+ private static final int ALIGNMENT_CHANGED = 1 << 0;
+ private static final int VALIDATE_SEQUENCES = 1 << 1;
+
+ static Map<String, List<Component>> components = new HashMap<>();
/**
- * DOCUMENT ME!
+ * Add the given component to those registered under the given sequence set
+ * id. Does nothing if already added.
*
* @param comp
- * DOCUMENT ME!
* @param al
- * DOCUMENT ME!
*/
public static void Register(Component comp, String seqSetId)
{
- if (components == null)
- {
- components = new Hashtable();
- }
-
if (components.containsKey(seqSetId))
{
- Vector comps = (Vector) components.get(seqSetId);
+ List<Component> comps = components.get(seqSetId);
if (!comps.contains(comp))
{
- comps.addElement(comp);
+ comps.add(comp);
}
}
else
{
- Vector vcoms = new Vector();
- vcoms.addElement(comp);
+ List<Component> vcoms = new ArrayList<>();
+ vcoms.add(comp);
components.put(seqSetId, vcoms);
}
}
+ /**
+ * Remove this component from all registrations. Also removes a registered
+ * sequence set id if there are no remaining components registered against it.
+ *
+ * @param comp
+ */
public static void RemoveComponent(Component comp)
{
if (components == null)
return;
}
- Enumeration en = components.keys();
- while (en.hasMoreElements())
+ Iterator<String> it = components.keySet().iterator();
+ while (it.hasNext())
{
- String id = en.nextElement().toString();
- Vector comps = (Vector) components.get(id);
+ List<Component> comps = components.get(it.next());
comps.remove(comp);
- if (comps.size() == 0)
+ if (comps.isEmpty())
{
- components.remove(id);
+ it.remove();
}
}
}
public static void Refresh(Component source, String id,
boolean alignmentChanged, boolean validateSequences)
{
- if (components == null)
- {
- return;
- }
-
- Component comp;
- Vector comps = (Vector) components.get(id);
+ List<Component> comps = components.get(id);
+ int mode = (alignmentChanged ? ALIGNMENT_CHANGED : 0) | (validateSequences ? VALIDATE_SEQUENCES : 0);
if (comps == null)
{
return;
}
+ repaintComponents(source, mode, comps.toArray(new Component[comps.size()]));
+ }
- Enumeration e = comps.elements();
- while (e.hasMoreElements())
+ public static void repaintComponents(Component source, int mode,
+ Component... comps)
+ {
+ for (int i = 0; i < comps.length; i++)
{
- comp = (Component) e.nextElement();
-
- if (comp == source)
+ Component comp = comps[i];
+ if (comp == null)
{
continue;
}
-
- if (validateSequences && comp instanceof AlignmentPanel
- && source instanceof AlignmentPanel)
+ if (comp instanceof AlignmentPanel)
{
- validateSequences(((AlignmentPanel) source).av.getAlignment(),
- ((AlignmentPanel) comp).av.getAlignment());
+ if ((mode & VALIDATE_SEQUENCES) != 0 && source instanceof AlignmentPanel)
+ {
+ validateSequences(((AlignmentPanel) source).av.getAlignment(),
+ ((AlignmentPanel) comp).av.getAlignment());
+ }
+ if ((mode & ALIGNMENT_CHANGED) != 0)
+ {
+ ((AlignmentPanel) comp).alignmentChanged();
+ }
}
-
- if (comp instanceof AlignmentPanel && alignmentChanged)
+ else if (comp instanceof IdCanvas)
{
- ((AlignmentPanel) comp).alignmentChanged();
+ // BH 2019.04.22 fixes JS problem of repaint() consolidation
+ // that occurs in JavaScript but not Java [JAL-3226]
+ ((IdCanvas) comp).setNoFastPaint();
+ }
+ else if (comp instanceof SeqCanvas)
+ {
+ // BH 2019.04.22 fixes JS problem of repaint() consolidation
+ // that occurs in JavaScript but not Java [JAL-3226]
+ ((SeqCanvas) comp).setNoFastPaint();
}
-
comp.repaint();
}
}
{
// raise an implementation warning here - not sure if this situation
// will ever occur
- System.err
- .println("IMPLEMENTATION PROBLEM: DATASET out of sync due to an insert whilst calling PaintRefresher.validateSequences(AlignmentI, ALignmentI)");
+ System.err.println(
+ "IMPLEMENTATION PROBLEM: DATASET out of sync due to an insert whilst calling PaintRefresher.validateSequences(AlignmentI, ALignmentI)");
}
- List<SequenceI> alsq;
- synchronized (alsq = comp.getSequences())
+ List<SequenceI> alsq = comp.getSequences();
+ synchronized (alsq)
{
alsq.add(i, a1[i]);
}
static AlignmentPanel[] getAssociatedPanels(String id)
{
- if (components == null)
- {
- return new AlignmentPanel[0];
- }
- ;
- Vector comps = (Vector) components.get(id);
+ List<Component> comps = components.get(id);
if (comps == null)
{
return new AlignmentPanel[0];
}
- ;
- Vector tmp = new Vector();
- int i, iSize = comps.size();
- for (i = 0; i < iSize; i++)
+ List<AlignmentPanel> tmp = new ArrayList<>();
+ for (Component comp : comps)
{
- if (comps.elementAt(i) instanceof AlignmentPanel)
+ if (comp instanceof AlignmentPanel)
{
- tmp.addElement(comps.elementAt(i));
+ tmp.add((AlignmentPanel) comp);
}
}
- AlignmentPanel[] result = new AlignmentPanel[tmp.size()];
- tmp.toArray(result);
-
- return result;
+ return tmp.toArray(new AlignmentPanel[tmp.size()]);
}
+
}
git://source.jalview.org / jalview.git / blobdiff