Merge branch 'develop' into features/JAL-2446NCList

[jalview.git] / src / jalview / gui / PopupMenu.java

diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java
index 3e2eba9..2473ba9 100644 (file)
--- a/src/jalview/gui/PopupMenu.java
+++ b/src/jalview/gui/PopupMenu.java
@@ -1944,8 +1944,7 @@ public class PopupMenu extends JPopupMenu implements ColourChangeListener
       if (start <= end)
       {
         seqs.add(sg.getSequenceAt(i).getDatasetSequence());
-        features.add(
-                new SequenceFeature(null, null, null, start, end, null));
+        features.add(new SequenceFeature(null, null, start, end, null));
       }
     }
 
@@ -1958,7 +1957,8 @@ public class PopupMenu extends JPopupMenu implements ColourChangeListener
               .amendFeatures(seqs, features, true, ap))
       {
         ap.alignFrame.setShowSeqFeatures(true);
-        ap.highlightSearchResults(null);
+        ap.av.setSearchResults(null); // clear highlighting
+        ap.repaint(); // draw new/amended features
       }
     }
   }