JAL-3141 Tests now available and working, bringing to light a problem with the classI...

[jalview.git] / src / jalview / gui / Preferences.java

diff --git a/src/jalview/gui/Preferences.java b/src/jalview/gui/Preferences.java
index aa8369a..e1c6089 100755 (executable)
--- a/src/jalview/gui/Preferences.java
+++ b/src/jalview/gui/Preferences.java
@@ -24,6 +24,7 @@ import jalview.analysis.AnnotationSorter.SequenceAnnotationOrder;
 import jalview.bin.Cache;
 import jalview.gui.Help.HelpId;
 import jalview.gui.StructureViewer.ViewerType;
+import jalview.io.BackupFiles;
 import jalview.io.FileFormatI;
 import jalview.io.JalviewFileChooser;
 import jalview.io.JalviewFileView;
@@ -168,8 +169,6 @@ public class Preferences extends GPreferences
 
   JInternalFrame frame;
 
-  DasSourceBrowser dasSource;
-
   private WsPreferences wsPrefs;
 
   private OptionsParam promptEachTimeOpt = new OptionsParam(
@@ -190,8 +189,6 @@ public class Preferences extends GPreferences
     super();
     frame = new JInternalFrame();
     frame.setContentPane(this);
-    dasSource = new DasSourceBrowser();
-    dasTab.add(dasSource, BorderLayout.CENTER);
     wsPrefs = new WsPreferences();
     wsTab.add(wsPrefs, BorderLayout.CENTER);
     int width = 500, height = 450;
@@ -525,7 +522,7 @@ public class Preferences extends GPreferences
     autoIdWidth.setSelected(Cache.getDefault("FIGURE_AUTOIDWIDTH", false));
     userIdWidth.setEnabled(!autoIdWidth.isSelected());
     userIdWidthlabel.setEnabled(!autoIdWidth.isSelected());
-    Integer wi = Cache.getIntegerProperty("FIGURE_USERIDWIDTH");
+    Integer wi = Cache.getIntegerProperty("FIGURE_FIXEDIDWIDTH");
     userIdWidth.setText(wi == null ? "" : wi.toString());
     // TODO: refactor to use common enum via FormatAdapter and allow extension
     // for new flat file formats
@@ -550,6 +547,35 @@ public class Preferences extends GPreferences
 
     annotations_actionPerformed(null); // update the display of the annotation
                                        // settings
+    
+    
+    /*
+     * Set Backups tab defaults
+     */
+    enableBackupFiles
+            .setSelected(Cache.getDefault(BackupFiles.ENABLED, true));
+    suffixTemplate.setText(Cache.getDefault(BackupFiles.SUFFIX,
+            "-v" + BackupFiles.getNumPlaceHolder()));
+    suffixDigitsSpinner
+            .setValue(Cache.getDefault(BackupFiles.SUFFIX_DIGITS, 3));
+    suffixReverse.setSelected(
+            Cache.getDefault(BackupFiles.REVERSE_ORDER, false));
+    backupfilesKeepAll
+            .setSelected(Cache.getDefault(BackupFiles.NO_MAX, false));
+    backupfilesRollMaxSpinner
+            .setValue(Cache.getDefault(BackupFiles.ROLL_MAX, 4));
+    backupfilesConfirmDelete.setSelected(
+            Cache.getDefault(BackupFiles.CONFIRM_DELETE_OLD, true));
+    backupsOptionsSetEnabled(enableBackupFiles.isSelected());
+    /*
+    suffixPanel.setPreferredSize(
+            new Dimension(width, suffixPanel.getHeight()));
+    keepfilesPanel.setPreferredSize(
+            new Dimension(width, keepfilesPanel.getHeight()));
+    exampleFilesPanel.setPreferredSize(
+            new Dimension(width, exampleFilesPanel.getHeight()));
+            */
+
   }
 
   /**
@@ -784,7 +810,7 @@ public class Preferences extends GPreferences
     Cache.applicationProperties.setProperty("FIGURE_AUTOIDWIDTH",
             Boolean.toString(autoIdWidth.isSelected()));
     userIdWidth_actionPerformed();
-    Cache.applicationProperties.setProperty("FIGURE_USERIDWIDTH",
+    Cache.applicationProperties.setProperty("FIGURE_FIXEDIDWIDTH",
             userIdWidth.getText());
 
     /*
@@ -797,8 +823,26 @@ public class Preferences extends GPreferences
     Cache.applicationProperties.setProperty("PAD_GAPS",
             Boolean.toString(padGaps.isSelected()));
 
-    dasSource.saveProperties(Cache.applicationProperties);
     wsPrefs.updateAndRefreshWsMenuConfig(false);
+
+    /*
+     * Save Backups settings
+     */
+    Cache.applicationProperties.setProperty(BackupFiles.CONFIRM_DELETE_OLD,
+            Boolean.toString(backupfilesConfirmDelete.isSelected()));
+    Cache.applicationProperties.setProperty(BackupFiles.ENABLED,
+            Boolean.toString(enableBackupFiles.isSelected()));
+    Cache.applicationProperties.setProperty(BackupFiles.NO_MAX,
+            Boolean.toString(backupfilesKeepAll.isSelected()));
+    Cache.applicationProperties.setProperty(BackupFiles.REVERSE_ORDER,
+            Boolean.toString(suffixReverse.isSelected()));
+    Cache.applicationProperties.setProperty(BackupFiles.SUFFIX,
+            suffixTemplate.getText());
+    Cache.applicationProperties.setProperty(BackupFiles.ROLL_MAX,
+            Integer.toString(getSpinnerInt(backupfilesRollMaxSpinner, 4)));
+    Cache.applicationProperties.setProperty(BackupFiles.SUFFIX_DIGITS,
+            Integer.toString(getSpinnerInt(suffixDigitsSpinner, 3)));
+
     Cache.saveProperties();
     Desktop.instance.doConfigureStructurePrefs();
     try