*/
package jalview.gui;
-import java.util.*;
-
-import java.awt.*;
-import java.awt.event.*;
-
-import javax.swing.*;
-
-import jalview.bin.*;
-import jalview.io.*;
-import jalview.jbgui.*;
-import jalview.schemes.*;
+import jalview.bin.Cache;
+import jalview.io.JalviewFileChooser;
+import jalview.io.JalviewFileView;
+import jalview.jbgui.GPreferences;
+import jalview.jbgui.GSequenceLink;
+import jalview.schemes.ColourSchemeProperty;
import jalview.util.MessageManager;
+import java.awt.BorderLayout;
+import java.awt.Color;
+import java.awt.Dimension;
+import java.awt.Font;
+import java.awt.event.ActionEvent;
+import java.awt.event.MouseEvent;
+import java.util.Collection;
+import java.util.StringTokenizer;
+import java.util.Vector;
+
+import javax.swing.JColorChooser;
+import javax.swing.JFileChooser;
+import javax.swing.JInternalFrame;
+import javax.swing.JOptionPane;
+
/**
* DOCUMENT ME!
*
DasSourceBrowser dasSource;
- private WsPreferences wsPrefs;
+ private final WsPreferences wsPrefs;
/**
* Creates a new Preferences object.
* @param e
* DOCUMENT ME!
*/
+ @Override
public void ok_actionPerformed(ActionEvent e)
{
Boolean.toString(clustaljv.isSelected()));
Cache.applicationProperties.setProperty("FASTA_JVSUFFIX",
Boolean.toString(fastajv.isSelected()));
+ Cache.applicationProperties.setProperty("MEGA_JVSUFFIX",
+ Boolean.toString(megajv.isSelected()));
Cache.applicationProperties.setProperty("MSF_JVSUFFIX",
Boolean.toString(msfjv.isSelected()));
Cache.applicationProperties.setProperty("PFAM_JVSUFFIX",
/**
* DOCUMENT ME!
*/
+ @Override
public void startupFileTextfield_mouseClicked()
{
JalviewFileChooser chooser = new JalviewFileChooser(
jalview.bin.Cache.getProperty("LAST_DIRECTORY"),
new String[]
- { "fa, fasta, fastq", "aln", "pfam", "msf", "pir", "blc", "jar" },
+ { "fa, fasta, fastq", "aln", "pfam", "meg", "msf", "pir",
+ "blc", "jar" },
new String[]
- { "Fasta", "Clustal", "PFAM", "MSF", "PIR", "BLC", "Jalview" },
+ { "Fasta", "Clustal", "PFAM", "MEGA", "MSF", "PIR", "BLC",
+ "Jalview" },
jalview.bin.Cache.getProperty("DEFAULT_FILE_FORMAT"));
chooser.setFileView(new JalviewFileView());
chooser.setDialogTitle("Select startup file");
* @param e
* DOCUMENT ME!
*/
+ @Override
public void cancel_actionPerformed(ActionEvent e)
{
try
* @param e
* DOCUMENT ME!
*/
+ @Override
public void annotations_actionPerformed(ActionEvent e)
{
conservation.setEnabled(annotations.isSelected());
&& (identity.isSelected() || showGroupConsensus.isSelected()));
}
+ @Override
public void newLink_actionPerformed(ActionEvent e)
{
}
}
+ @Override
public void editLink_actionPerformed(ActionEvent e)
{
GSequenceLink link = new GSequenceLink();
}
}
+ @Override
public void deleteLink_actionPerformed(ActionEvent e)
{
int index = linkNameList.getSelectedIndex();
linkURLList.setListData(urlLinks);
}
+ @Override
public void defaultBrowser_mouseClicked(MouseEvent e)
{
JFileChooser chooser = new JFileChooser(".");
* jalview.jbgui.GPreferences#showunconserved_actionPerformed(java.awt.event
* .ActionEvent)
*/
+ @Override
protected void showunconserved_actionPerformed(ActionEvent e)
{
// TODO Auto-generated method stub
return groupURLLinks;
}
+ @Override
public void minColour_actionPerformed()
{
Color col = JColorChooser.showDialog(this,
minColour.repaint();
}
+ @Override
public void maxColour_actionPerformed()
{
Color col = JColorChooser.showDialog(this,