JAL-1667 PDBe Search Interface implementation

[jalview.git] / src / jalview / gui / SequenceFetcher.java

diff --git a/src/jalview/gui/SequenceFetcher.java b/src/jalview/gui/SequenceFetcher.java
index 2928102..fb94c05 100755 (executable)
--- a/src/jalview/gui/SequenceFetcher.java
+++ b/src/jalview/gui/SequenceFetcher.java
@@ -59,7 +59,42 @@ import com.stevesoft.pat.Regex;
 
 public class SequenceFetcher extends JPanel implements Runnable
 {
-  // ASequenceFetcher sfetch;
+  JLabel dbeg = new JLabel();
+
+  JDatabaseTree database;
+
+  JButton databaseButt;
+
+  JLabel jLabel1 = new JLabel();
+
+  JCheckBox replacePunctuation = new JCheckBox();
+
+  JButton ok = new JButton();
+
+  JButton clear = new JButton();
+
+  JButton example = new JButton();
+
+  JButton close = new JButton();
+
+  JPanel jPanel1 = new JPanel();
+
+  JTextArea textArea = new JTextArea();
+
+  JScrollPane jScrollPane1 = new JScrollPane();
+
+  JPanel jPanel2 = new JPanel();
+
+  JPanel jPanel3 = new JPanel();
+
+  JPanel jPanel4 = new JPanel();
+
+  BorderLayout borderLayout1 = new BorderLayout();
+
+  BorderLayout borderLayout2 = new BorderLayout();
+
+  BorderLayout borderLayout3 = new BorderLayout();
+
   JInternalFrame frame;
 
   IProgressIndicator guiWindow;
@@ -80,6 +115,7 @@ public class SequenceFetcher extends JPanel implements Runnable
 
   private static Thread initingThread = null;
 
+  int x = 0;
   /**
    * Blocking method that initialises and returns the shared instance of the
    * SequenceFetcher client
@@ -318,37 +354,22 @@ public class SequenceFetcher extends JPanel implements Runnable
     databaseButt.setFont(JvSwingUtils.getLabelFont());
     database.addActionListener(new ActionListener()
     {
-
       @Override
       public void actionPerformed(ActionEvent e)
       {
-        try
-        {
-          databaseButt.setText(database.getSelectedItem()
-                  + (database.getSelectedSources().size() > 1 ? " (and "
-                          + database.getSelectedSources().size()
-                          + " others)" : ""));
-          String eq = database.getExampleQueries();
-          dbeg.setText(MessageManager.formatMessage(
-                  "label.example_query_param", new String[]
-                  { eq }));
-          boolean enablePunct = !(eq != null && eq.indexOf(",") > -1);
-          for (DbSourceProxy dbs : database.getSelectedSources())
-          {
-            if (dbs instanceof jalview.ws.dbsources.das.datamodel.DasSequenceSource)
-            {
-              enablePunct = false;
-              break;
-            }
-          }
-          replacePunctuation.setEnabled(enablePunct);
+        x++;
+        String currentSelection = database.getSelectedItem();
 
-        } catch (Exception ex)
+        if (!currentSelection.equalsIgnoreCase("pdb"))
+        {
+            otherSourceAction();
+        }
+        if (currentSelection.equalsIgnoreCase("pdb") && ((x % 2) == 0))
         {
-          dbeg.setText("");
-          replacePunctuation.setEnabled(true);
+          frame.dispose();
+          new EBIFetchPanel();
         }
-        jPanel2.repaint();
+
       }
     });
     dbeg.setText("");
@@ -367,6 +388,41 @@ public class SequenceFetcher extends JPanel implements Runnable
 
   }
 
+  private void hideX()
+  {
+    this.setVisible(false);
+  }
+  private void otherSourceAction()
+  {
+    try
+    {
+      databaseButt.setText(database.getSelectedItem()
+              + (database.getSelectedSources().size() > 1 ? " (and "
+                      + database.getSelectedSources().size() + " others)"
+                      : ""));
+      String eq = database.getExampleQueries();
+      dbeg.setText(MessageManager.formatMessage(
+              "label.example_query_param", new String[]
+              { eq }));
+      boolean enablePunct = !(eq != null && eq.indexOf(",") > -1);
+      for (DbSourceProxy dbs : database.getSelectedSources())
+      {
+        if (dbs instanceof jalview.ws.dbsources.das.datamodel.DasSequenceSource)
+        {
+          enablePunct = false;
+          break;
+        }
+      }
+      replacePunctuation.setEnabled(enablePunct);
+
+    } catch (Exception ex)
+    {
+      dbeg.setText("");
+      replacePunctuation.setEnabled(true);
+    }
+    jPanel2.repaint();
+  }
+
   protected void example_actionPerformed()
   {
     DbSourceProxy db = null;
@@ -385,41 +441,7 @@ public class SequenceFetcher extends JPanel implements Runnable
     jPanel3.repaint();
   }
 
-  JLabel dbeg = new JLabel();
-
-  JDatabaseTree database;
-
-  JButton databaseButt;
-
-  JLabel jLabel1 = new JLabel();
-
-  JCheckBox replacePunctuation = new JCheckBox();
-
-  JButton ok = new JButton();
-
-  JButton clear = new JButton();
-
-  JButton example = new JButton();
-
-  JButton close = new JButton();
-
-  JPanel jPanel1 = new JPanel();
-
-  JTextArea textArea = new JTextArea();
-
-  JScrollPane jScrollPane1 = new JScrollPane();
-
-  JPanel jPanel2 = new JPanel();
-
-  JPanel jPanel3 = new JPanel();
-
-  JPanel jPanel4 = new JPanel();
-
-  BorderLayout borderLayout1 = new BorderLayout();
 
-  BorderLayout borderLayout2 = new BorderLayout();
-
-  BorderLayout borderLayout3 = new BorderLayout();
 
   public void close_actionPerformed(ActionEvent e)
   {