licencing and format applied (eclipse)

[jalview.git] / src / jalview / gui / SliderPanel.java

diff --git a/src/jalview/gui/SliderPanel.java b/src/jalview/gui/SliderPanel.java
index 315935b..a200699 100755 (executable)
--- a/src/jalview/gui/SliderPanel.java
+++ b/src/jalview/gui/SliderPanel.java
@@ -30,29 +30,36 @@ import jalview.schemes.*;
 
 /**
  * DOCUMENT ME!
- *
+ * 
  * @author $author$
  * @version $Revision$
  */
-public class SliderPanel
-    extends GSliderPanel
+public class SliderPanel extends GSliderPanel
 {
   static JInternalFrame conservationSlider;
+
   static JInternalFrame PIDSlider;
+
   AlignmentPanel ap;
+
   boolean forConservation = true;
+
   ColourSchemeI cs;
 
   /**
    * Creates a new SliderPanel object.
-   *
-   * @param ap DOCUMENT ME!
-   * @param value DOCUMENT ME!
-   * @param forConserve DOCUMENT ME!
-   * @param cs DOCUMENT ME!
+   * 
+   * @param ap
+   *                DOCUMENT ME!
+   * @param value
+   *                DOCUMENT ME!
+   * @param forConserve
+   *                DOCUMENT ME!
+   * @param cs
+   *                DOCUMENT ME!
    */
-  public SliderPanel(final AlignmentPanel ap, int value, boolean forConserve,
-                     ColourSchemeI cs)
+  public SliderPanel(final AlignmentPanel ap, int value,
+          boolean forConserve, ColourSchemeI cs)
   {
     this.ap = ap;
     this.cs = cs;
@@ -86,7 +93,7 @@ public class SliderPanel
     {
       public void mouseReleased(MouseEvent evt)
       {
-         ap.paintAlignment(true);
+        ap.paintAlignment(true);
       }
     });
 
@@ -96,15 +103,18 @@ public class SliderPanel
 
   /**
    * DOCUMENT ME!
-   *
-   * @param ap DOCUMENT ME!
-   * @param cs DOCUMENT ME!
-   * @param source DOCUMENT ME!
-   *
+   * 
+   * @param ap
+   *                DOCUMENT ME!
+   * @param cs
+   *                DOCUMENT ME!
+   * @param source
+   *                DOCUMENT ME!
+   * 
    * @return DOCUMENT ME!
    */
   public static int setConservationSlider(AlignmentPanel ap,
-                                          ColourSchemeI cs, String source)
+          ColourSchemeI cs, String source)
   {
     SliderPanel sp = null;
 
@@ -121,8 +131,8 @@ public class SliderPanel
       sp.cs = cs;
     }
 
-    conservationSlider.setTitle("Conservation Colour Increment  (" +
-                                source + ")");
+    conservationSlider.setTitle("Conservation Colour Increment  (" + source
+            + ")");
 
     if (ap.av.alignment.getGroups() != null)
     {
@@ -145,39 +155,41 @@ public class SliderPanel
     {
       PIDSlider.setClosed(true);
       PIDSlider = null;
-    }
-    catch (Exception ex)
+    } catch (Exception ex)
     {
     }
 
     if (!conservationSlider.isVisible())
     {
-      Desktop.addInternalFrame(conservationSlider,
-                               conservationSlider.getTitle(), 420, 90, false);
-      conservationSlider.addInternalFrameListener(new javax.swing.event.
-                                                  InternalFrameAdapter()
-      {
-        public void internalFrameClosed(
-            javax.swing.event.InternalFrameEvent e)
-        {
-          conservationSlider = null;
-        }
-      });
+      Desktop.addInternalFrame(conservationSlider, conservationSlider
+              .getTitle(), 420, 90, false);
+      conservationSlider
+              .addInternalFrameListener(new javax.swing.event.InternalFrameAdapter()
+              {
+                public void internalFrameClosed(
+                        javax.swing.event.InternalFrameEvent e)
+                {
+                  conservationSlider = null;
+                }
+              });
       conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER);
     }
   }
 
   /**
    * DOCUMENT ME!
-   *
-   * @param ap DOCUMENT ME!
-   * @param cs DOCUMENT ME!
-   * @param source DOCUMENT ME!
-   *
+   * 
+   * @param ap
+   *                DOCUMENT ME!
+   * @param cs
+   *                DOCUMENT ME!
+   * @param source
+   *                DOCUMENT ME!
+   * 
    * @return DOCUMENT ME!
    */
   public static int setPIDSliderSource(AlignmentPanel ap, ColourSchemeI cs,
-                                       String source)
+          String source)
   {
     SliderPanel pid = null;
 
@@ -219,33 +231,33 @@ public class SliderPanel
     {
       conservationSlider.setClosed(true);
       conservationSlider = null;
-    }
-    catch (Exception ex)
+    } catch (Exception ex)
     {
     }
 
     if (!PIDSlider.isVisible())
     {
       Desktop.addInternalFrame(PIDSlider, PIDSlider.getTitle(), 420, 90,
-                               false);
+              false);
       PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
-      PIDSlider.addInternalFrameListener(new javax.swing.event.
-                                         InternalFrameAdapter()
-      {
-        public void internalFrameClosed(
-            javax.swing.event.InternalFrameEvent e)
-        {
-          PIDSlider = null;
-        }
-      });
+      PIDSlider
+              .addInternalFrameListener(new javax.swing.event.InternalFrameAdapter()
+              {
+                public void internalFrameClosed(
+                        javax.swing.event.InternalFrameEvent e)
+                {
+                  PIDSlider = null;
+                }
+              });
       PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
     }
   }
 
   /**
    * DOCUMENT ME!
-   *
-   * @param i DOCUMENT ME!
+   * 
+   * @param i
+   *                DOCUMENT ME!
    */
   public void valueChanged(int i)
   {
@@ -272,7 +284,7 @@ public class SliderPanel
     {
       if (allGroups != null)
       {
-        toChange = ( (SequenceGroup) allGroups.get(groupIndex)).cs;
+        toChange = ((SequenceGroup) allGroups.get(groupIndex)).cs;
 
         if (toChange == null)
         {
@@ -302,8 +314,9 @@ public class SliderPanel
 
   /**
    * DOCUMENT ME!
-   *
-   * @param b DOCUMENT ME!
+   * 
+   * @param b
+   *                DOCUMENT ME!
    */
   public void setAllGroupsCheckEnabled(boolean b)
   {
@@ -312,8 +325,9 @@ public class SliderPanel
 
   /**
    * DOCUMENT ME!
-   *
-   * @param e DOCUMENT ME!
+   * 
+   * @param e
+   *                DOCUMENT ME!
    */
   public void valueField_actionPerformed(ActionEvent e)
   {
@@ -321,8 +335,7 @@ public class SliderPanel
     {
       int i = Integer.parseInt(valueField.getText());
       slider.setValue(i);
-    }
-    catch (NumberFormatException ex)
+    } catch (NumberFormatException ex)
     {
       valueField.setText(slider.getValue() + "");
     }
@@ -330,8 +343,9 @@ public class SliderPanel
 
   /**
    * DOCUMENT ME!
-   *
-   * @param value DOCUMENT ME!
+   * 
+   * @param value
+   *                DOCUMENT ME!
    */
   public void setValue(int value)
   {
@@ -340,7 +354,7 @@ public class SliderPanel
 
   /**
    * DOCUMENT ME!
-   *
+   * 
    * @return DOCUMENT ME!
    */
   public int getValue()