JAL-1720 JAL-2002 improvement for 'uniprot coverage' filter using facet pivot query

[jalview.git] / src / jalview / gui / StructureChooser.java

diff --git a/src/jalview/gui/StructureChooser.java b/src/jalview/gui/StructureChooser.java
index cf58322..7d0d76a 100644 (file)
--- a/src/jalview/gui/StructureChooser.java
+++ b/src/jalview/gui/StructureChooser.java
@@ -385,14 +385,30 @@ public class StructureChooser extends GStructureChooser implements
         for (SequenceI seq : selectedSequences)
         {
           PDBRestRequest pdbRequest = new PDBRestRequest();
-          pdbRequest.setAllowEmptySeq(false);
-          pdbRequest.setResponseSize(1);
-          pdbRequest.setFieldToSearchBy("(");
-          pdbRequest.setFieldToSortBy(fieldToFilterBy,
-                  !chk_invertFilter.isSelected());
-          pdbRequest.setSearchTerm(buildQuery(seq) + ")");
-          pdbRequest.setWantedFields(wantedFields);
-          pdbRequest.setAssociatedSequence(seq);
+          if (fieldToFilterBy.equalsIgnoreCase("uniprot_coverage"))
+          {
+            System.out.println(">>>>>> Filtering with uniprot coverate");
+            pdbRequest.setAllowEmptySeq(false);
+            pdbRequest.setResponseSize(1);
+            pdbRequest.setFieldToSearchBy("(");
+            pdbRequest.setSearchTerm(buildQuery(seq) + ")");
+            pdbRequest.setWantedFields(wantedFields);
+            pdbRequest.setAssociatedSequence(seq);
+            pdbRequest.setFacet(true);
+            pdbRequest.setFacetPivot(fieldToFilterBy + ",entry_entity");
+            pdbRequest.setFacetPivotMinCount(1);
+          }
+          else
+          {
+            pdbRequest.setAllowEmptySeq(false);
+            pdbRequest.setResponseSize(1);
+            pdbRequest.setFieldToSearchBy("(");
+            pdbRequest.setFieldToSortBy(fieldToFilterBy,
+                    !chk_invertFilter.isSelected());
+            pdbRequest.setSearchTerm(buildQuery(seq) + ")");
+            pdbRequest.setWantedFields(wantedFields);
+            pdbRequest.setAssociatedSequence(seq);
+          }
           pdbRestCleint = new PDBRestClient();
           PDBRestResponse resultList;
           try