JAL-4034 showConfirmDialog works for both desktop and jalviewjs

[jalview.git] / src / jalview / gui / StructureChooser.java

diff --git a/src/jalview/gui/StructureChooser.java b/src/jalview/gui/StructureChooser.java
index b32e435..9ff181b 100644 (file)
--- a/src/jalview/gui/StructureChooser.java
+++ b/src/jalview/gui/StructureChooser.java
@@ -43,6 +43,7 @@ import javax.swing.table.AbstractTableModel;
 
 import jalview.api.structures.JalviewStructureDisplayI;
 import jalview.bin.Cache;
+import jalview.bin.Console;
 import jalview.bin.Jalview;
 import jalview.datamodel.PDBEntry;
 import jalview.datamodel.SequenceI;
@@ -353,30 +354,36 @@ public class StructureChooser extends GStructureChooser
         }
       };
     };
-    if (ignoreGui || seqsWithoutSourceDBRef
-            .size() < THRESHOLD_WARN_UNIPROT_FETCH_NEEDED)
+    int threshold = Cache.getDefault("THRESHOLD_WARN_UNIPROT_FETCH",
+            THRESHOLD_WARN_UNIPROT_FETCH_NEEDED);
+    Console.debug("Using Uniprot fetch threshold of " + threshold);
+    boolean runThread = false;
+    if (ignoreGui || seqsWithoutSourceDBRef.size() < threshold)
+    {
+      runThread = true;
+    }
+    // need cancel and no to result in the discoverPDB action - mocked is
+    // 'cancel' TODO: mock should be OK
+    if (!runThread)
+    {
+      int answer = JvOptionPane.showConfirmDialog(this,
+              MessageManager.formatMessage(
+                      "label.fetch_references_for_3dbeacons",
+                      seqsWithoutSourceDBRef.size()),
+              MessageManager.getString("label.3dbeacons"),
+              JvOptionPane.YES_NO_OPTION, JvOptionPane.PLAIN_MESSAGE);
+      runThread = (answer == JvOptionPane.OK_OPTION);
+    }
+    if (runThread)
     {
       Executors.defaultThreadFactory().newThread(discoverCanonicalDBrefs)
               .start();
       return;
     }
-    // need cancel and no to result in the discoverPDB action - mocked is
-    // 'cancel' TODO: mock should be OK
-    JvOptionPane.newOptionDialog(this)
-            .setResponseHandler(JvOptionPane.OK_OPTION,
-                    discoverCanonicalDBrefs)
-            .setResponseHandler(JvOptionPane.CANCEL_OPTION, revertview)
-            .setResponseHandler(JvOptionPane.NO_OPTION, revertview)
-            .showDialog(
-                    MessageManager.formatMessage(
-                            "label.fetch_references_for_3dbeacons",
-                            seqsWithoutSourceDBRef.size()),
-                    MessageManager.getString("label.3dbeacons"),
-                    JvOptionPane.YES_NO_OPTION, JvOptionPane.PLAIN_MESSAGE,
-                    null, new Object[]
-                    { MessageManager.getString("action.ok"),
-                        MessageManager.getString("action.cancel") },
-                    MessageManager.getString("action.ok"));
+    else
+    {
+      revertview.run();
+    }
   }
 
   /**