JAL-3949 - refactor logging from jalview.bin.Cache to jalview.bin.Console

[jalview.git] / src / jalview / gui / StructureViewerBase.java

diff --git a/src/jalview/gui/StructureViewerBase.java b/src/jalview/gui/StructureViewerBase.java
index 30ecc80..8290dd9 100644 (file)
--- a/src/jalview/gui/StructureViewerBase.java
+++ b/src/jalview/gui/StructureViewerBase.java
@@ -47,6 +47,7 @@ import javax.swing.event.MenuListener;
 
 import jalview.api.AlignmentViewPanel;
 import jalview.bin.Cache;
+import jalview.bin.Console;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.PDBEntry;
 import jalview.datamodel.SequenceI;
@@ -814,7 +815,7 @@ public abstract class StructureViewerBase extends GStructureViewer
       {
         sp.append("'" + alignPanel.getViewName() + "' ");
       }
-      Cache.log.info("Couldn't align structures with the " + sp.toString()
+      Console.info("Couldn't align structures with the " + sp.toString()
               + "associated alignment panels.", e);
     }
     return reply;
@@ -1156,7 +1157,7 @@ public abstract class StructureViewerBase extends GStructureViewer
     {
       if (afclient.isValidReference(pdbid))
       {
-        pdbseq = afclient.getSequenceRecords(pdbid);
+        pdbseq = afclient.getSequenceRecords(pdbid,processingEntry.getRetrievalUrl());
       } else {
           if (processingEntry.hasRetrievalUrl())
           {