sequences are private in SequenceGroup

[jalview.git] / src / jalview / gui / TreeCanvas.java

diff --git a/src/jalview/gui/TreeCanvas.java b/src/jalview/gui/TreeCanvas.java
index 944aa73..1628f58 100755 (executable)
--- a/src/jalview/gui/TreeCanvas.java
+++ b/src/jalview/gui/TreeCanvas.java
@@ -228,7 +228,7 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
             SequenceGroup selected = av.getSelectionGroup();\r
 \r
             if ((selected != null) &&\r
-                    selected.sequences.contains((SequenceI) node.element()))\r
+                    selected.getSequences(false).contains((SequenceI) node.element()))\r
             {\r
                 g.setColor(Color.gray);\r
 \r
@@ -758,7 +758,8 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
                        && av.getGlobalColourScheme().conservationApplied())\r
                     {\r
                         Conservation c = new Conservation("Group",\r
-                                ResidueProperties.propHash, 3, sg.sequences,\r
+                                ResidueProperties.propHash, 3,\r
+                                sg.getSequences(false),\r
                                 sg.getStartRes(), sg.getEndRes());\r
 \r
                         c.calculate();\r