+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.gui;
import java.awt.BorderLayout;
import java.awt.Dimension;
import java.awt.FlowLayout;
import java.awt.Font;
+import java.awt.GridBagConstraints;
+import java.awt.GridBagLayout;
import java.awt.GridLayout;
+import java.awt.Rectangle;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
-import java.awt.event.ComponentEvent;
-import java.awt.event.ComponentListener;
-import java.awt.event.ContainerEvent;
-import java.awt.event.ContainerListener;
-import java.awt.event.MouseEvent;
-import java.awt.event.MouseListener;
+import java.awt.event.HierarchyBoundsListener;
+import java.awt.event.HierarchyEvent;
+import java.awt.event.ItemEvent;
+import java.awt.event.ItemListener;
import java.awt.event.WindowEvent;
import java.awt.event.WindowListener;
-import java.awt.event.WindowStateListener;
-import java.util.ArrayList;
-import java.util.EventObject;
-import java.util.HashSet;
+import java.net.URL;
import java.util.Hashtable;
+import java.util.Iterator;
import java.util.List;
-import java.util.Map;
import java.util.Vector;
import javax.swing.JButton;
-import javax.swing.JCheckBox;
import javax.swing.JComboBox;
+import javax.swing.JDialog;
import javax.swing.JFrame;
import javax.swing.JLabel;
-import javax.swing.JOptionPane;
import javax.swing.JPanel;
import javax.swing.JScrollPane;
-import javax.swing.JTable;
+import javax.swing.JSplitPane;
import javax.swing.JTextArea;
-import javax.swing.ListSelectionModel;
-import javax.swing.SwingUtilities;
import javax.swing.border.TitledBorder;
-import javax.swing.event.CellEditorListener;
-import javax.swing.table.*;
+import javax.swing.event.DocumentEvent;
+import javax.swing.event.DocumentListener;
import compbio.metadata.Argument;
import compbio.metadata.Option;
import compbio.metadata.Preset;
import compbio.metadata.PresetManager;
import compbio.metadata.RunnerConfig;
-import compbio.metadata.ValueConstrain;
-import compbio.metadata.ValueConstrain.Type;
-
+import jalview.bin.Cache;
+import jalview.gui.OptsAndParamsPage.OptionBox;
+import jalview.gui.OptsAndParamsPage.ParamBox;
+import jalview.util.MessageManager;
+import jalview.ws.jws2.JabaParamStore;
+import jalview.ws.jws2.JabaPreset;
import jalview.ws.jws2.Jws2Discoverer;
-import jalview.ws.jws2.Jws2Discoverer.Jws2Instance;
-
-public class WsJobParameters extends JPanel
+import jalview.ws.jws2.jabaws2.Jws2Instance;
+import jalview.ws.params.ArgumentI;
+import jalview.ws.params.OptionI;
+import jalview.ws.params.ParamDatastoreI;
+import jalview.ws.params.ParameterI;
+import jalview.ws.params.WsParamSetI;
+import net.miginfocom.swing.MigLayout;
+
+/**
+ * job parameter editing/browsing dialog box. User can browse existing settings
+ * (user + presets + Defaults), and any changes to parameters creates a modified
+ * user parameter set. LOGIC: If the parameter set is modified, and its name is
+ * a valid, non-existant user parameter set, then a save button is shown. If the
+ * parameter set is modified and its name is a valid, extant user parameter set,
+ * then an update button is shown. If user parameter set's name is edited, and
+ * old name exists as a writable user parameter set, then rename button is
+ * shown. If current parameter set is associated with a user defined parameter
+ * set, then : if set is modifed, a 'revert' button is shown. if set is not
+ * modified, a 'delete' button is shown.
+ *
+ * @author JimP
+ *
+ */
+public class WsJobParameters extends JPanel implements ItemListener,
+ ActionListener, DocumentListener, OptsParametersContainerI
{
- JPanel setDetails = new JPanel();
+ URL linkImageURL = getClass().getResource("/images/link.gif");
+
+ private static final String SVC_DEF = "Defaults"; // this is the null
+ // parameter set as shown to
+ // user
- JPanel settingsPanel = new JPanel();
+ /**
+ * manager for options and parameters.
+ */
+ OptsAndParamsPage opanp = new OptsAndParamsPage(this);
+ /**
+ * panel containing job options
+ */
JPanel jobOptions = new JPanel();
- JPanel jobParameters = new JPanel();
+ /**
+ * panel containing job parameters
+ */
+ JPanel paramList = new JPanel();
- JPanel paramButtons = new JPanel();
+ JPanel SetNamePanel = new JPanel();
- JButton exportParams = new JButton();
+ JPanel setDetails = new JPanel();
- JButton importParams = new JButton();
+ JSplitPane settingsPanel = new JSplitPane();
- JButton resetParams = new JButton();
+ JPanel jobPanel = new JPanel();
- JButton addParam = new JButton();
+ JScrollPane jobOptionsPane = new JScrollPane();
- JButton removeParam = new JButton();
+ JButton createpref = new JButton();
- JButton editParam = new JButton();
+ JButton deletepref = new JButton();
- JLabel setName = new JLabel();
+ JButton revertpref = new JButton();
- JTextArea setDescr = new JTextArea();
+ JButton updatepref = new JButton();
- JTable paramTable = new JTable();
+ JButton startjob = new JButton();
+
+ JButton canceljob = new JButton();
+
+ JComboBox setName = new JComboBox();
+
+ JTextArea setDescr = new JTextArea();
JScrollPane paramPane = new JScrollPane();
+ // ScrollablePanel optsAndparams = new ScrollablePanel();
+ JPanel optsAndparams = new JPanel();
+
RunnerConfig serviceOptions;
- List<Parameter> availableParameters;
+ ParamDatastoreI paramStore;
- private BorderLayout jparamLayout;
+ private int MAX_OPTWIDTH = 200;
WsJobParameters(Jws2Instance service)
{
this(service, null);
}
- public WsJobParameters(Jws2Instance service, Preset p)
+ public WsJobParameters(Jws2Instance service, WsParamSetI preset)
{
- this(null, service, p);
+ this(null, service, preset, null);
}
/**
* @param desktop
* - if null, create new JFrame outside of desktop
* @param service
- * @param p
+ * @param preset
+ */
+ public WsJobParameters(JFrame parent, Jws2Instance service,
+ WsParamSetI preset, List<Argument> jobArgset)
+ {
+ this(parent, null, service, preset, jobArgset);
+ }
+
+ /**
+ *
+ * @param parent
+ * @param paramStorei
+ * @param service
+ * @param preset
+ * @param jobArgset
*/
- public WsJobParameters(JFrame parent, Jws2Instance service, Preset p)
+ public WsJobParameters(JFrame parent, ParamDatastoreI paramStorei,
+ Jws2Instance service, WsParamSetI preset,
+ List<Argument> jobArgset)
{
super();
jbInit();
- initTableUI();
+ this.paramStore = paramStorei;
+ if (paramStore == null)
+ {
+ paramStore = service.getParamStore();
+ }
+ this.service = service;
+ // argSetModified(false);
// populate parameter table
- initForService(service, p);
+ initForService(service, preset, jobArgset);
// display in new JFrame attached to parent.
validate();
}
- private void jbInit()
- {
- exportParams.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
- exportParams.setText("Export");
- exportParams.setToolTipText("Export parameters to a file");
- exportParams.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- exportParams_actionPerformed(e);
- }
- });
- importParams.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
- importParams.setText("Import");
- importParams.setToolTipText("Import parameters from a file");
- importParams.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- importParams_actionPerformed(e);
- }
- });
- resetParams.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
- resetParams.setText("Defaults");
- resetParams.setToolTipText("Reset to defaults");
- resetParams.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- resetParams_actionPerformed(e);
- }
- });
- addParam.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
- addParam.setText("Add");
- addParam.setToolTipText("Add new parameter");
- addParam.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- addParam_actionPerformed(e);
- }
- });
- removeParam.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
- removeParam.setText("Remove");
- removeParam.setToolTipText("Remove selected parameter");
- removeParam.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- removeParam_actionPerformed(e);
- }
- });
- editParam.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
- editParam.setText("Edit");
- editParam.setToolTipText("Edit selected parameter");
- editParam.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- editParam_actionPerformed(e);
- }
- });
+ int response = -1;
- setDetails.setBorder(new TitledBorder("Details"));
- setDetails.setLayout(new GridLayout(2, 1));
- setDescr.setColumns(40);
- setDescr.setWrapStyleWord(true);
- setDescr.setPreferredSize(new Dimension(350, 100));
- setDetails.add(setName);
- setDetails.add(setDescr);
- setDetails.setPreferredSize(new Dimension(360, 150));
- settingsPanel.setLayout(new BorderLayout());
- jobOptions.setBorder(new TitledBorder("Options"));
- jobParameters.setBorder(new TitledBorder("Parameters"));
- jobParameters.setLayout(jparamLayout = new BorderLayout());
- paramPane.setPreferredSize(new Dimension(360, 300));
- paramButtons.setLayout(new GridLayout(2, 3));
- paramButtons.add(addParam);
- paramButtons.add(editParam);
- paramButtons.add(removeParam);
- // TODO: relayout buttons nicely
- paramButtons.add(exportParams);
- paramButtons.add(importParams);
- paramButtons.add(resetParams);
- jobParameters.add(paramPane, BorderLayout.NORTH);
- jobParameters.add(paramButtons, BorderLayout.SOUTH);
- settingsPanel.add(jobOptions, BorderLayout.NORTH);
- settingsPanel.add(jobParameters, BorderLayout.SOUTH);
- setLayout(new BorderLayout());
- setPreferredSize(new Dimension(400, 600));
- setSize(new Dimension(400, 600));
- add(setDetails, BorderLayout.NORTH);
- add(settingsPanel, BorderLayout.CENTER);
- }
+ JDialog frame = null;
/**
- * need to populate table and validate after calling this to set up table and
- * add it to pane
+ * shows a modal dialog containing the parameters.
+ *
+ * @return
*/
- public void initTableUI()
+ public boolean showRunDialog()
{
- paramTable = new JTable();
- paramTable.getTableHeader()
- .setFont(new Font("Verdana", Font.PLAIN, 12));
- paramTable.setFont(new Font("Verdana", Font.PLAIN, 12));
- paramPane.getViewport().removeAll();
- paramPane.getViewport().add(paramTable);
- paramTable.setDefaultRenderer(Argument.class, new ArgumentRenderer());
- paramTable.setDefaultRenderer(Parameter.class, new ArgumentRenderer());
- paramTable.setDefaultRenderer(Option.class, new ArgumentRenderer());
- paramTable.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
- paramTable.addMouseListener(new MouseListener()
- {
+ frame = new JDialog(Desktop.instance, true);
- @Override
- public void mouseClicked(MouseEvent e)
- {
- if (e.getClickCount() > 1)
- {
- editParam_actionPerformed(null);
- }
- }
+ frame.setTitle(MessageManager.formatMessage("label.edit_params_for",
+ new String[]
+ { service.getActionText() }));
+ Rectangle deskr = Desktop.instance.getBounds();
+ Dimension pref = this.getPreferredSize();
+ frame.setBounds(
+ new Rectangle((int) (deskr.getCenterX() - pref.width / 2),
+ (int) (deskr.getCenterY() - pref.height / 2),
+ pref.width, pref.height));
+ frame.setContentPane(this);
+ // should perhaps recover defaults from user prefs.
+
+ frame.validate();
+ javax.swing.SwingUtilities.invokeLater(new Runnable()
+ {
@Override
- public void mouseEntered(MouseEvent e)
+ public void run()
{
- // tooltips
- // TODO Auto-generated method stub
+ // jobPanel.setDividerLocation(0.25);
}
+ });
+ frame.setVisible(true);
- @Override
- public void mouseExited(MouseEvent e)
- {
- // tooltips
- // TODO Auto-generated method stub
+ if (response > 0)
+ {
+ return true;
+ }
+ return false;
+ }
- }
+ private void jbInit()
+ {
+ this.addHierarchyBoundsListener(new HierarchyBoundsListener()
+ {
@Override
- public void mousePressed(MouseEvent e)
+ public void ancestorResized(HierarchyEvent arg0)
{
- // TODO Auto-generated method stub
-
+ refreshParamLayout();
}
@Override
- public void mouseReleased(MouseEvent e)
+ public void ancestorMoved(HierarchyEvent arg0)
{
// TODO Auto-generated method stub
}
-
});
- // paramTable.setDefaultEditor(Argument.class, new WsArgumentEditor(this));
- }
-
- public class WsArgumentEditor implements TableCellEditor
- {
-
- int p;
-
- Argument arg;
-
- WsJobParameters wsparm;
-
- public WsArgumentEditor(WsJobParameters wsJobParameters)
- {
- wsparm = wsJobParameters;
- p = wsparm.paramTable.getSelectedRow();
- arg = (Argument) wsparm.paramTable.getValueAt(p, wsparm.paramTable
- .getSelectedColumn());
- /*
- * if (arg instanceof Option) { if
- * (JOptionPane.showInternalConfirmDialog(Desktop.desktop,
- * "Remove option "+arg.getName(),
- * "Delete option ?",JOptionPane.YES_NO_OPTION,
- * JOptionPane.QUESTION_MESSAGE) == JOptionPane.YES_OPTION) {
- *
- * } }
- */
- }
+ updatepref = JvSwingUtils.makeButton(
+ MessageManager.getString("action.update"),
+ MessageManager.getString("label.update_user_parameter_set"),
+ new ActionListener()
+ {
- @Override
- public Component getTableCellEditorComponent(JTable table,
- Object value, boolean isSelected, int row, int column)
- {
- // TODO Auto-generated method stub
- return null;
- }
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ update_actionPerformed(e);
+ }
+ });
+ deletepref = JvSwingUtils.makeButton(
+ MessageManager.getString("action.delete"),
+ MessageManager.getString("label.delete_user_parameter_set"),
+ new ActionListener()
+ {
- @Override
- public void addCellEditorListener(CellEditorListener l)
- {
- // TODO Auto-generated method stub
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ delete_actionPerformed(e);
+ }
+ });
+ createpref = JvSwingUtils.makeButton(
+ MessageManager.getString("action.create"),
+ MessageManager.getString("label.create_user_parameter_set"),
+ new ActionListener()
+ {
- }
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ create_actionPerformed(e);
+ }
+ });
+ revertpref = JvSwingUtils.makeButton(
+ MessageManager.getString("action.revert"),
+ MessageManager
+ .getString("label.revert_changes_user_parameter_set"),
+ new ActionListener()
+ {
- @Override
- public void cancelCellEditing()
- {
- // TODO Auto-generated method stub
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ revert_actionPerformed(e);
+ }
+ });
+ startjob = JvSwingUtils.makeButton(
+ MessageManager.getString("action.start_job"),
+ MessageManager.getString("label.start_job_current_settings"),
+ new ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ startjob_actionPerformed(e);
+ }
+ });
+ canceljob = JvSwingUtils.makeButton(
+ MessageManager.getString("action.cancel_job"),
+ MessageManager.getString("label.cancel_job_close_dialog"),
+ new ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ canceljob_actionPerformed(e);
+ }
+ });
+
+ setDetails.setBorder(
+ new TitledBorder(MessageManager.getString("label.details")));
+ setDetails.setLayout(new BorderLayout());
+ setDescr.setColumns(40);
+ setDescr.setWrapStyleWord(true);
+ setDescr.setLineWrap(true);
+ setDescr.setBackground(getBackground());
+ setDescr.setEditable(true);
+ setDescr.getDocument().addDocumentListener(this);
+ setDescr.setToolTipText(
+ MessageManager.getString("label.edit_notes_parameter_set"));
+ JScrollPane setDescrView = new JScrollPane();
+ setDescrView.getViewport().setView(setDescr);
+ setName.setEditable(true);
+ setName.addItemListener(this);
+ setName.getEditor().addActionListener(this);
+ JPanel setNameInfo = new JPanel(new FlowLayout(FlowLayout.LEFT));
+ GridBagLayout gbl = new GridBagLayout();
+ SetNamePanel.setLayout(gbl);
+
+ JLabel setNameLabel = new JLabel(
+ MessageManager.getString("label.current_parameter_set_name"));
+ setNameLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
+
+ setNameInfo.add(setNameLabel);
+ setNameInfo.add(setName);
+
+ // initial button visibility
+ updatepref.setVisible(false);
+ deletepref.setVisible(false);
+ revertpref.setVisible(false);
+ createpref.setVisible(false);
+ JPanel setsavebuts = new JPanel();
+ setsavebuts.setLayout(new FlowLayout(FlowLayout.LEFT)); // GridLayout(1,2));
+ ((FlowLayout) setsavebuts.getLayout()).setHgap(10);
+ ((FlowLayout) setsavebuts.getLayout()).setVgap(0);
+ JPanel spacer = new JPanel();
+ spacer.setPreferredSize(new Dimension(2, 30));
+ setsavebuts.add(spacer);
+ setsavebuts.add(deletepref);
+ setsavebuts.add(revertpref);
+ setsavebuts.add(createpref);
+ setsavebuts.add(updatepref);
+ // setsavebuts.setSize(new Dimension(150, 30));
+ JPanel buttonArea = new JPanel(new GridLayout(1, 1));
+ buttonArea.add(setsavebuts);
+ SetNamePanel.add(setNameInfo);
+ GridBagConstraints gbc = new GridBagConstraints();
+ gbc.gridheight = 2;
+ gbl.setConstraints(setNameInfo, gbc);
+ SetNamePanel.add(buttonArea);
+ gbc = new GridBagConstraints();
+ gbc.gridx = 0;
+ gbc.gridy = 2;
+ gbc.gridheight = 1;
+ gbl.setConstraints(buttonArea, gbc);
+ setDetails.add(setDescrView, BorderLayout.CENTER);
+
+ // paramPane.setPreferredSize(new Dimension(360, 400));
+ // paramPane.setPreferredSize(null);
+ jobOptions.setBorder(
+ new TitledBorder(MessageManager.getString("label.options")));
+ jobOptions.setOpaque(true);
+ paramList.setBorder(
+ new TitledBorder(MessageManager.getString("label.parameters")));
+ paramList.setOpaque(true);
+ JPanel bjo = new JPanel(new BorderLayout()),
+ bjp = new JPanel(new BorderLayout());
+ bjo.add(jobOptions, BorderLayout.CENTER);
+ bjp.add(paramList, BorderLayout.CENTER);
+ bjp.setOpaque(true);
+ bjo.setOpaque(true);
+ // optsAndparams.setScrollableWidth(ScrollableSizeHint.FIT);
+ // optsAndparams.setScrollableHeight(ScrollableSizeHint.NONE);
+ // optsAndparams.setLayout(new BorderLayout());
+ optsAndparams.setLayout(new BorderLayout());
+ optsAndparams.add(jobOptions, BorderLayout.NORTH);
+ optsAndparams.add(paramList, BorderLayout.CENTER);
+ JPanel jp = new JPanel(new BorderLayout());
+ jp.add(optsAndparams, BorderLayout.CENTER);
+ paramPane.getViewport().setView(jp);
+ paramPane.setBorder(null);
+ setLayout(new BorderLayout());
+ jobPanel.setPreferredSize(null);
+ jobPanel.setLayout(new BorderLayout());
+ jobPanel.add(setDetails, BorderLayout.NORTH);
+ jobPanel.add(paramPane, BorderLayout.CENTER);
+ // jobPanel.setOrientation(JSplitPane.VERTICAL_SPLIT);
+
+ add(SetNamePanel, BorderLayout.NORTH);
+ add(jobPanel, BorderLayout.CENTER);
+
+ JPanel dialogpanel = new JPanel();
+ dialogpanel.add(startjob);
+ dialogpanel.add(canceljob);
+ // JAL-1580: setMaximumSize() doesn't work, so just size for the worst case:
+ // check for null is for JUnit usage
+ final int windowHeight = Desktop.instance == null ? 540
+ : Desktop.instance.getHeight();
+ setPreferredSize(new Dimension(540, windowHeight));
+ add(dialogpanel, BorderLayout.SOUTH);
+ validate();
+ }
- }
+ protected void revert_actionPerformed(ActionEvent e)
+ {
+ reInitDialog(lastParmSet);
+ updateWebServiceMenus();
+ }
- @Override
- public Object getCellEditorValue()
+ protected void update_actionPerformed(ActionEvent e)
+ {
+ if (isUserPreset)
{
- // TODO Auto-generated method stub
- return null;
+ String curname = ((String) setName.getSelectedItem()).trim();
+ _updatePreset(lastParmSet, curname);
+ lastParmSet = curname;
+ isUserPreset = true;
+ initArgSetModified();
+ syncSetNamesWithStore();
}
+ }
- @Override
- public boolean isCellEditable(EventObject anEvent)
- {
- // TODO Auto-generated method stub
- return false;
- }
+ private void _deleteUserPreset(String lastParmSet2)
+ {
+ paramStore.deletePreset(lastParmSet2);
+ }
- @Override
- public void removeCellEditorListener(CellEditorListener l)
+ protected void delete_actionPerformed(ActionEvent e)
+ {
+ if (isUserPreset)
{
- // TODO Auto-generated method stub
-
+ // delete current preset's saved entry
+ _deleteUserPreset(lastParmSet);
}
+ reInitDialog(null); // service default
+ updateWebServiceMenus();
+ }
- @Override
- public boolean shouldSelectCell(EventObject anEvent)
+ protected void create_actionPerformed(ActionEvent e)
+ {
+ String curname = ((String) setName.getSelectedItem()).trim();
+ if (curname.length() > 0)
{
- // TODO Auto-generated method stub
- return false;
+ _storeCurrentPreset(curname);
+ lastParmSet = curname;
+ isUserPreset = true;
+ reInitDialog(curname);
+ initArgSetModified();
+ updateWebServiceMenus();
}
-
- @Override
- public boolean stopCellEditing()
+ else
{
- // TODO Auto-generated method stub
- return false;
+ // TODO: show warning
+ System.err.println("Invalid name. Not saved.");
}
-
- }
-
- protected void editParam_actionPerformed(ActionEvent e)
- {
- // TODO Auto-generated method stub
-
}
- protected void removeParam_actionPerformed(ActionEvent e)
+ protected void canceljob_actionPerformed(ActionEvent e)
{
- // TODO Auto-generated method stub
-
+ response = 0;
+ if (frame != null)
+ {
+ frame.setVisible(false);
+ }
}
- protected void addParam_actionPerformed(ActionEvent e)
+ protected void startjob_actionPerformed(ActionEvent e)
{
- // TODO Auto-generated method stub
-
+ response = 1;
+ if (frame != null)
+ {
+ frame.setVisible(false);
+ }
}
- protected void resetParams_actionPerformed(ActionEvent e)
- {
- // TODO Auto-generated method stub
+ Jws2Instance service;
- }
-
- protected void importParams_actionPerformed(ActionEvent e)
- {
- // TODO Auto-generated method stub
+ /**
+ * list of service presets in the gui
+ */
+ Hashtable servicePresets = null;
- }
+ /**
+ * set if dialog is being set - so handlers will avoid spurious events
+ */
+ boolean settingDialog = false;
- protected void exportParams_actionPerformed(ActionEvent e)
+ void initForService(Jws2Instance service, WsParamSetI jabap,
+ List<Argument> jabajobArgset)
{
- // TODO Auto-generated method stub
+ WsParamSetI p = null;
+ List<ArgumentI> jobArgset = null;
+ settingDialog = true;
+ { // instantiate the abstract proxy for Jaba objects
+ jobArgset = jabajobArgset == null ? null
+ : JabaParamStore.getJwsArgsfromJaba(jabajobArgset);
+ p = jabap; // (jabap != null) ? paramStore.getPreset(jabap.getName()) :
+ // null;
+ }
- }
+ Hashtable exnames = new Hashtable();
+ for (int i = 0, iSize = setName.getItemCount(); i < iSize; i++)
+ {
+ exnames.put(setName.getItemAt(i), setName.getItemAt(i));
+ }
+ servicePresets = new Hashtable();
+ // Add the default entry - if not present already.
+ if (!exnames.contains(SVC_DEF))
+ {
+ setName.addItem(SVC_DEF);
+ exnames.put(SVC_DEF, SVC_DEF);
+ servicePresets.put(SVC_DEF, SVC_DEF);
+ }
+ String curname = (p == null ? "" : p.getName());
+ for (WsParamSetI pr : paramStore.getPresets())
+ {
+ if (!pr.isModifiable())
+ {
+ servicePresets.put(pr.getName(), "preset");
+ }
+ else
+ {
+ }
+ if (!exnames.contains(pr.getName()))
+ {
+ setName.addItem(pr.getName());
+ }
+ }
+ // TODO: if initial jobArgset matches a given user setting or preset then
+ // should recover setting accordingly
+ // updateTable(p, jobArgset);
+ if (p != null)
+ {
+ reInitDialog(p.getName());
+ initArgSetModified();
+ }
+ else
+ {
+ if (jobArgset != null && jobArgset.size() > 0)
+ {
+ curSetName = "Supplied Settings";
+ isUserPreset = false;
+ updateTable(p, jobArgset);
+ setName.setSelectedItem(curSetName);
+ updateButtonDisplay();
+ }
+ else
+ {
+ curSetName = null;
+ reInitDialog(null);
+ }
+ }
+ settingDialog = false;
- void initForService(Jws2Instance service, Preset p)
- {
- serviceOptions = service.getRunnerConfig();
- updateTable(p);
}
@SuppressWarnings("unchecked")
- private void updateTable(Preset p)
+ private void updateTable(WsParamSetI p, List<ArgumentI> jobArgset)
{
- WsParameterTableModel mdl = null;
- TableModel tmdl = paramTable.getModel();
- if (tmdl instanceof WsParameterTableModel)
+ boolean setDefaultParams = false;
+ if (lastParmSet == null)
{
- mdl = (WsParameterTableModel) tmdl;
+ isUserPreset = false;
+ // First call - so provide Service default settings
+ setName.setSelectedItem(lastSetName = SVC_DEF);
}
- if (mdl == null)
+ if (p == null && SVC_DEF.equals("" + setName.getSelectedItem()))
{
- paramTable.setModel(mdl = new WsParameterTableModel());
+ // indicate that service defaults should be set if available
+ setDefaultParams = true;
}
- availableParameters = new ArrayList<Parameter>();
- List<Parameter> setargs = new ArrayList<Parameter>();
// populate table from default parameter set.
- List<Argument> args = serviceOptions.getArguments();
-
+ List<ArgumentI> args = paramStore.getServiceParameters();
+
// split to params and required arguments
{
- for (Argument arg : args)
+ int cw = 0;
+ boolean optset = false;
+ for (ArgumentI myarg : args)
{
- Argument myarg = (Argument) arg;
// Ideally, Argument would implement isRequired !
- if (myarg instanceof Parameter)
+ if (myarg instanceof ParameterI)
{
- Parameter parm = (Parameter) myarg;
- if (parm.isRequired())
- {
- setargs.add(parm);
- }
- else
- {
- availableParameters.add(parm);
- }
+ ParameterI parm = (ParameterI) myarg;
+ opanp.addParameter(parm).validate();
}
else
{
- if (myarg instanceof Option)
+ if (myarg instanceof OptionI)
{
- Option opt = (Option) myarg;
- addOption(opt);
- if (opt.isRequired())
+ OptionI opt = (OptionI) myarg;
+ OptionBox ob = opanp.addOption(opt);
+ ob.resetToDefault(setDefaultParams);
+ if (MAX_OPTWIDTH < ob.getPreferredSize().width)
{
- selectOption(opt, opt.getDefaultValue());
+ MAX_OPTWIDTH = ob.getPreferredSize().width;
}
+ ob.validate();
+ cw += ob.getPreferredSize().width + 5;
}
else
{
System.err.println("Ignoring unknown service argument type "
- + arg.getClass().getName());
+ + myarg.getClass().getName());
}
}
}
+ args = null; // no more args to process.
}
-
if (p != null)
{
- setDescr.setText(p.getDescription());
- setName.setText(p.getName());
+ isUserPreset = false;
+ // initialise setname
+ setName.setSelectedItem(lastSetName = p.getName());
+ setDescr.setText(lastDescrText = p.getDescription());
// TODO - URL link
try
{
- args = p.getArguments(serviceOptions);
+ args = p.getArguments();
} catch (Exception e)
{
e.printStackTrace();
}
- setargs.clear();
- // get setargs from current object
- if (args != null)
+ // TODO: check if args should be unselected prior to resetting using the
+ // preset
+ }
+
+ if (jobArgset != null)
+ {
+ argSetModified(jobArgset, true);
+ args = jobArgset;
+ }
+ // get setargs from current object
+ if (args != null)
+ {
+ for (ArgumentI arg : args)
{
- for (Argument arg : args)
+ if (arg instanceof ParameterI)
+ {
+ opanp.setParameter((ParameterI) arg);
+ }
+ else
{
- if (arg instanceof Parameter)
+ if (arg instanceof OptionI)
{
- setargs.add((Parameter) arg);
+ // System.out.println("Setting option "
+ // + System.identityHashCode(arg) + ":" + arg.getName()
+ // + " with " + arg.getDefaultValue());
+ opanp.selectOption((OptionI) arg, arg.getValue());
}
- else
- {
- if (arg instanceof Option)
- {
- selectOption((Option) arg, arg.getDefaultValue());
- }
- }
-
}
+
}
}
- mdl.setData(setargs);
- paramTable.setModel(mdl);
- // paramTable.validate();
- jobOptions.setLayout(new GridLayout(optSet.size() / 2 + 1, 2));
- jobOptions.validate();
+ refreshParamLayout();
+ revalidate();
}
- private void selectOption(Option opt, String string)
+ private boolean isModified()
{
- OptionBox cb = optSet.get(opt.getName());
- if (cb == null)
- {
- cb = addOption(opt);
- }
- if (string == null)
+ return modifiedElements.size() > 0;
+ }
+
+ private Hashtable modifiedElements = new Hashtable();
+
+ /**
+ * reset gui and modification state settings
+ */
+ private void initArgSetModified()
+ {
+ curSetName = null;
+ modifiedElements.clear();
+ updateButtonDisplay();
+ }
+
+ private void updateButtonDisplay()
+ {
+ boolean _update = false, _create = false, _delete = false,
+ _revert = false;
+ if (modifiedElements.size() > 0)
{
- // no value specified.
- if (opt.isRequired())
+ // set modified
+ _revert = true;
+ _update = isUserPreset; // can only update user presets
+ if (!isUserPreset || modifiedElements.containsKey(setName))
{
- // indicate option needs to be selected!
- }
- else
- {
- cb.enabled.setSelected(false);
+ // name modified - can create new preset
+ _create = true;
}
}
else
{
- cb.enabled.setSelected(true);
+ // set unmodified
+ }
+ // can still delete a user preset
+ _delete = isUserPreset;
- if (opt.getPossibleValues().contains(string))
- {
- cb.val.setSelectedItem(string);
- }
- else
+ createpref.setVisible(_create);
+ updatepref.setVisible(_update);
+ deletepref.setVisible(_delete);
+ revertpref.setVisible(_revert);
+ validate();
+ }
+
+ @Override
+ public void argSetModified(Object modifiedElement, boolean b)
+ {
+ if (settingDialog)
+ {
+ return;
+ }
+ if (!b)
+ {
+ modifiedElements.remove(modifiedElement);
+ }
+ else
+ {
+ if (b && modifiedElement == setName
+ && modifiedElements.contains(modifiedElement))
{
- throw new Error("Invalid value " + string + " for option " + opt);
+ // HACK! prevents iteration on makeSetNameValid
+ b = false;
}
-
+ modifiedElements.put(modifiedElement, modifiedElement);
}
+ // set mod status based on presence of elements in table
+ if (b && modifiedElements.size() > 0)
+ {
+ makeSetNameValid(!isUserPreset);
+ SetNamePanel.revalidate();
+ }
+ updateButtonDisplay();
}
- Map<String, OptionBox> optSet = new Hashtable<String, OptionBox>();
-
- public class OptionBox extends JPanel
+ private boolean isServicePreset(String selectedItem)
{
- JComboBox val = new JComboBox();
-
- JCheckBox enabled = new JCheckBox();
+ return selectedItem.equals(SVC_DEF)
+ || servicePresets.containsKey(selectedItem);
+ }
- public OptionBox(Option opt)
+ /**
+ * check if the current set name is a valid set name for saving, if not, then
+ * fix it.
+ */
+ private void makeSetNameValid(boolean newuserset)
+ {
+ boolean stn = settingDialog;
+ boolean renamed = false;
+ settingDialog = true;
+ String nm = (curSetName != null ? curSetName
+ : (String) setName.getSelectedItem());
+ // check if the name is reserved - if it is, rename it.
+ if (isServicePreset(nm))
+ {
+ nm = "User " + nm;
+ renamed = true;
+ }
+ String tnm = nm;
+ if (newuserset)
{
- setLayout(new BorderLayout());
- enabled.setSelected(opt.isRequired());
- enabled.setFont(new Font("Verdana", Font.PLAIN, 11));
- enabled.setText(opt.getName());
- enabled.setToolTipText(opt.getDescription());
- add(enabled, BorderLayout.NORTH);
- if (opt.getPossibleValues().size() > 1)
+ int i = 0;
+ while (paramStore.getPreset(tnm) != null)
{
- setLayout(new GridLayout(1,2));
- for (Object str : opt.getPossibleValues())
- {
- val.addItem((String) str);
- }
- val.setSelectedItem((String) opt.getDefaultValue());
- add(val, BorderLayout.SOUTH);
+ tnm = nm + " (" + (++i) + ")";
+ renamed = true;
+ }
+ if (i > 0)
+ {
+ nm = tnm;
}
- // TODO: add actionListeners for popup (to open further info),
- // and to update list of parameters if an option is enabled
- // that takes a value.
}
- }
- private OptionBox addOption(Option opt)
- {
- OptionBox cb = optSet.get(opt.getName());
- if (cb == null)
+ boolean makeupdate = false;
+ // sync the gui with the preset database
+ for (int i = 0, iS = setName.getItemCount(); i < iS; i++)
+ {
+ String snm = (String) setName.getItemAt(i);
+ if (snm.equals(nm))
+ {
+ makeupdate = true;
+ // setName.setSelectedIndex(i);
+ }
+ }
+ if (!makeupdate)
+ {
+ setName.addItem(curSetName = nm);
+ setName.setSelectedItem(curSetName);
+ }
+ if (renamed)
{
- cb = new OptionBox(opt);
- optSet.put(opt.getName(), cb);
- jobOptions.add(cb);
+ settingDialog = false; // we need this name change to be registered.
+ argSetModified(setName, renamed);
}
- return cb;
+ settingDialog = stn;
}
- class WsParameterTableModel extends AbstractTableModel
+ @Override
+ public void refreshParamLayout()
{
- // arg list - vector for thread safety
- public Vector<Parameter> data = new Vector<Parameter>();
+ // optsAndparams.setPreferredSize(null);
+ FlowLayout fl = new FlowLayout(FlowLayout.LEFT);
+ int sep = fl.getVgap();
+ boolean fh = true;
+ int os = 0,
+ s = jobOptions.getBorder().getBorderInsets(jobOptions).bottom
+ + jobOptions.getBorder().getBorderInsets(jobOptions).top
+ + 2 * sep;
+ /**
+ * final height for viewport
+ */
+ int finalh = s;
+ int panewidth = paramPane.getViewport().getSize().width - 120
+ - jobOptions.getBorder().getBorderInsets(jobOptions).left
+ + jobOptions.getBorder().getBorderInsets(jobOptions).right;
- private String[] colNames =
- { "Parameter", "Value" };
+ int w = 2 * fl.getHgap()
+ + (MAX_OPTWIDTH > OptsAndParamsPage.PARAM_WIDTH ? MAX_OPTWIDTH
+ : OptsAndParamsPage.PARAM_WIDTH);
+ int hgap = fl.getHgap(), cw = hgap;
- @Override
- public int getColumnCount()
+ if (opanp.getOptSet().size() > 0)
{
- return 2;
- }
- @Override
- public int findColumn(String columnName)
+ jobOptions.setLayout(new MigLayout("", "", ""));
+ jobOptions.removeAll();
+
+ for (OptionBox pbox : opanp.getOptSet().values())
+ {
+ pbox.validate();
+ cw += pbox.getSize().width + hgap;
+ if (cw + 120 > panewidth)
+ {
+ jobOptions.add(pbox, "wrap");
+ // System.out.println("Wrap on "+pbox.option.getName());
+ cw = hgap + pbox.getSize().width;
+ fh = true;
+ }
+ else
+ {
+ jobOptions.add(pbox);
+ }
+ if (fh)
+ {
+ finalh += pbox.getSize().height + fl.getVgap();
+ fh = false;
+ }
+ }
+ jobOptions.revalidate();
+ }
+ else
{
- // TODO Auto-generated method stub
- return super.findColumn(columnName);
+ jobOptions.setVisible(false);
}
- public void setData(List<Parameter> setargs)
+ // Now layout the parameters assuming they occupy one column - to calculate
+ // total height of options+parameters
+ fl = new FlowLayout(FlowLayout.LEFT);
+ // helpful hint from
+ // http://stackoverflow.com/questions/2743177/top-alignment-for-flowlayout
+ fl.setAlignOnBaseline(true);
+ if (opanp.getParamSet().size() > 0)
{
- if (setargs != null)
+ paramList.removeAll();
+ paramList.setLayout(new MigLayout("", "", ""));
+ fh = true;
+ for (ParamBox pbox : opanp.getParamSet().values())
{
- data = new Vector<Parameter>(setargs);
+ pbox.validate();
+ cw += pbox.getSize().width + hgap;
+ if (cw + 160 > panewidth)
+ {
+ paramList.add(pbox, "wrap");
+ cw = pbox.getSize().width + hgap;
+ fh = true;
+ }
+ else
+ {
+ paramList.add(pbox);
+ }
+ if (fh)
+ {
+ finalh += pbox.getSize().height + fl.getVgap();
+ fh = false;
+ }
}
- else
- {
- data = new Vector<Parameter>();
- }
+ /*
+ * s = 2 * sep; for (ParamBox pbox : opanp.getParamSet().values()) {
+ * pbox.validate(); s += sep +
+ * pbox.getPreferredSize().height+pbox.getBorder
+ * ().getBorderInsets(pbox).bottom; }
+ *
+ * // paramList.setPreferredSize(new Dimension(w, s));
+ * os+=s+2*sep+paramList
+ * .getBorder().getBorderInsets(paramList).bottom+paramList
+ * .getBorder().getBorderInsets(paramList).top;
+ */
+ paramList.revalidate();
}
-
- public List<Parameter> getData()
+ else
{
- return new ArrayList<Parameter>(data);
+ paramList.setVisible(false);
}
+ // TODO: waste some time trying to eliminate any unnecessary .validate calls
+ // here
+ // System.out.println("Size will be : "+w+","+os);
+ // optsAndparams.setPreferredSize(null);
+ // paramPane.getViewport().setView(optsAndparams);
+ paramPane.getViewport().setAutoscrolls(true);
+ paramPane.revalidate();
+ revalidate();
+ }
- @Override
- public int getRowCount()
+ /**
+ * testing method - grab a service and parameter set and show the window
+ *
+ * @param args
+ * @j2sIgnore
+ */
+ public static void main(String[] args)
+ {
+ jalview.ws.jws2.Jws2Discoverer disc = jalview.ws.jws2.Jws2Discoverer
+ .getDiscoverer();
+ int p = 0;
+ if (args.length > 0)
{
- return data.size();
+ Vector<String> services = new Vector<>();
+ services.addElement(args[p++]);
+ Jws2Discoverer.getDiscoverer().setServiceUrls(services);
}
-
- @Override
- public Object getValueAt(int rowIndex, int columnIndex)
+ try
+ {
+ disc.run();
+ } catch (Exception e)
{
- if (rowIndex >= 0 && rowIndex < data.size())
+ System.err.println("Aborting. Problem discovering services.");
+ e.printStackTrace();
+ return;
+ }
+ Jws2Instance lastserv = null;
+ for (Jws2Instance service : disc.getServices())
+ {
+ lastserv = service;
+ if (p >= args.length || service.serviceType.equalsIgnoreCase(args[p]))
{
- Parameter prm = data.elementAt(rowIndex);
- switch (columnIndex)
+ if (lastserv != null)
{
- case 0:
- return prm.getName();
- case 1:
- Object exc = null;
- // the accessor name for the parameter value is possibly confusing
- String val = prm.getDefaultValue();
- try
+ List<Preset> prl = null;
+ Preset pr = null;
+ if (++p < args.length)
{
- if (prm.getValidValue().getType().equals(Type.Float))
+ PresetManager prman = lastserv.getPresets();
+ if (prman != null)
{
- exc = new Float(0);
- return Float.parseFloat(val);
+ pr = prman.getPresetByName(args[p]);
+ if (pr == null)
+ {
+ // just grab the last preset.
+ prl = prman.getPresets();
+ }
}
- if (prm.getValidValue().getType().equals(Type.Integer))
+ }
+ else
+ {
+ PresetManager prman = lastserv.getPresets();
+ if (prman != null)
{
- exc = new Integer(0);
- return Integer.parseInt(val);
+ prl = prman.getPresets();
}
- } catch (NumberFormatException e)
- {
- return exc;
}
- // must be a string
- return val;
+ Iterator<Preset> en = (prl == null) ? null : prl.iterator();
+ while (en != null && en.hasNext())
+ {
+ if (en != null)
+ {
+ if (!en.hasNext())
+ {
+ en = prl.iterator();
+ }
+ pr = en.next();
+ }
+ {
+ System.out.println("Testing opts dupes for "
+ + lastserv.getUri() + " : " + lastserv.getActionText()
+ + ":" + pr.getName());
+ List<Option> rg = lastserv.getRunnerConfig().getOptions();
+ for (Option o : rg)
+ {
+ try
+ {
+ Option cpy = jalview.ws.jws2.ParameterUtils.copyOption(o);
+ } catch (Exception e)
+ {
+ System.err.println("Failed to copy " + o.getName());
+ e.printStackTrace();
+ } catch (Error e)
+ {
+ System.err.println("Failed to copy " + o.getName());
+ e.printStackTrace();
+ }
+ }
+ }
+ {
+ System.out.println("Testing param dupes:");
+ List<Parameter> rg = lastserv.getRunnerConfig()
+ .getParameters();
+ for (Parameter o : rg)
+ {
+ try
+ {
+ Parameter cpy = jalview.ws.jws2.ParameterUtils
+ .copyParameter(o);
+ } catch (Exception e)
+ {
+ System.err.println("Failed to copy " + o.getName());
+ e.printStackTrace();
+ } catch (Error e)
+ {
+ System.err.println("Failed to copy " + o.getName());
+ e.printStackTrace();
+ }
+ }
+ }
+ {
+ System.out.println("Testing param write:");
+ List<String> writeparam = null, readparam = null;
+ try
+ {
+ writeparam = jalview.ws.jws2.ParameterUtils
+ .writeParameterSet(
+ pr.getArguments(lastserv.getRunnerConfig()),
+ " ");
+ System.out.println("Testing param read :");
+ List<Option> pset = jalview.ws.jws2.ParameterUtils
+ .processParameters(writeparam,
+ lastserv.getRunnerConfig(), " ");
+ readparam = jalview.ws.jws2.ParameterUtils
+ .writeParameterSet(pset, " ");
+ Iterator<String> o = pr.getOptions().iterator(),
+ s = writeparam.iterator(), t = readparam.iterator();
+ boolean failed = false;
+ while (s.hasNext() && t.hasNext())
+ {
+ String on = o.next(), sn = s.next(), st = t.next();
+ if (!sn.equals(st))
+ {
+ System.out.println(
+ "Original was " + on + " Phase 1 wrote " + sn
+ + "\tPhase 2 wrote " + st);
+ failed = true;
+ }
+ }
+ if (failed)
+ {
+ System.out.println(
+ "Original parameters:\n" + pr.getOptions());
+ System.out.println(
+ "Wrote parameters in first set:\n" + writeparam);
+ System.out.println(
+ "Wrote parameters in second set:\n" + readparam);
+
+ }
+ } catch (Exception e)
+ {
+ e.printStackTrace();
+ }
+ }
+ WsJobParameters pgui = new WsJobParameters(lastserv,
+ new JabaPreset(lastserv, pr));
+ JFrame jf = new JFrame(MessageManager
+ .formatMessage("label.ws_parameters_for", new String[]
+ { lastserv.getActionText() }));
+ JPanel cont = new JPanel(new BorderLayout());
+ pgui.validate();
+ cont.setPreferredSize(pgui.getPreferredSize());
+ cont.add(pgui, BorderLayout.CENTER);
+ jf.setLayout(new BorderLayout());
+ jf.add(cont, BorderLayout.CENTER);
+ jf.validate();
+ final Thread thr = Thread.currentThread();
+ jf.addWindowListener(new WindowListener()
+ {
+
+ @Override
+ public void windowActivated(WindowEvent e)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ public void windowClosed(WindowEvent e)
+ {
+ }
+
+ @Override
+ public void windowClosing(WindowEvent e)
+ {
+ thr.interrupt();
+
+ }
+
+ @Override
+ public void windowDeactivated(WindowEvent e)
+ {
+ // TODO Auto-generated method stub
- default:
+ }
+
+ @Override
+ public void windowDeiconified(WindowEvent e)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ public void windowIconified(WindowEvent e)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ public void windowOpened(WindowEvent e)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ });
+ jf.setVisible(true);
+ boolean inter = false;
+ while (!inter)
+ {
+ try
+ {
+ Thread.sleep(10000);
+ } catch (Exception e)
+ {
+ inter = true;
+ }
+ }
+ jf.dispose();
+ }
}
}
- return null;
}
+ }
- /*
- * (non-Javadoc)
- *
- * @see javax.swing.table.AbstractTableModel#getColumnClass(int)
- */
- @Override
- public Class<?> getColumnClass(int columnIndex)
+ public boolean isServiceDefaults()
+ {
+ return (!isModified()
+ && (lastParmSet != null && lastParmSet.equals(SVC_DEF)));
+ }
+
+ public List<ArgumentI> getJobParams()
+ {
+ return opanp.getCurrentSettings();
+ }
+
+ String lastParmSet = null;
+
+ /*
+ * Hashtable<String, Object[]> editedParams = new Hashtable<String,
+ * Object[]>();
+ *
+ * store the given parameters in the user parameter set database.
+ *
+ * @param storeSetName - lastParmSet
+ *
+ * @param descr - setDescr.getText()
+ *
+ * @param jobParams - getJobParams()
+ *
+ * private void _storeUserPreset(String storeSetName, String descr,
+ * List<ArgumentI> jobParams) { // this is a simple hash store. Object[] pset;
+ * editedParams.put(storeSetName, pset = new Object[3]); pset[0] =
+ * storeSetName; pset[1] = descr; pset[2] = jobParams; // writeParam("Saving "
+ * + storeSetName + ": ", jobParams); }
+ *
+ * private void writeParam(String nm, List<ArgumentI> params) { for (ArgumentI
+ * p : params) { System.out.println(nm + ":" + System.identityHashCode(p) +
+ * " Name: " + p.getName() + " Value: " + p.getDefaultValue()); } }
+ *
+ * private Object[] _getUserPreset(String setName) { Object[] pset =
+ * editedParams.get(setName); // if (pset != null) // writeParam("Retrieving "
+ * + setName + ": ", (List<Argument>) pset[2]); return pset; }
+ *
+ * * remove the given user preset from the preset stash
+ *
+ * @param setName
+ *
+ * private void _deleteUserPreset(String setName) {
+ * editedParams.remove(setName); }
+ */
+
+ private void syncSetNamesWithStore()
+ {
+ int n = 0;
+ // remove any set names in the drop down menu that aren't either a reserved
+ // setting, or a user defined or service preset.
+ Vector items = new Vector();
+ while (n < setName.getItemCount())
{
- switch (columnIndex)
+ String item = (String) setName.getItemAt(n);
+ if (!item.equals(SVC_DEF) && !paramStore.presetExists(item))
+ {
+ setName.removeItemAt(n);
+ }
+ else
{
- case 0:
- return String.class;
- case 1:
- return Parameter.class;
+ items.addElement(item);
+ n++;
}
- return super.getColumnClass(columnIndex);
}
-
- /*
- * (non-Javadoc)
- *
- * @see javax.swing.table.AbstractTableModel#getColumnName(int)
- */
- @Override
- public String getColumnName(int column)
+ if (!items.contains(SVC_DEF))
{
- return colNames[column];
+ setName.addItem(SVC_DEF);
}
-
- /*
- * (non-Javadoc)
- *
- * @see javax.swing.table.AbstractTableModel#isCellEditable(int, int)
- */
- @Override
- public boolean isCellEditable(int rowIndex, int columnIndex)
+ for (WsParamSetI upn : paramStore.getPresets())
{
- if (columnIndex == 1)
+ if (!items.contains(upn.getName()))
{
- return true;
+ setName.addItem(upn.getName());
}
- return false;
}
}
- class ArgumentRenderer implements TableCellRenderer
- {
+ /**
+ * true if lastParmSet is a user preset
+ */
+ boolean isUserPreset = false;
- @Override
- public Component getTableCellRendererComponent(JTable table,
- Object value, boolean isSelected, boolean hasFocus, int row,
- int column)
+ private void reInitDialog(String nextPreset)
+ {
+ settingDialog = true;
+ // updateTable(null,null); // first reset to defaults
+ WsParamSetI pset = null;
+ if (nextPreset != null && nextPreset.length() > 0)
{
- if (value instanceof Option)
- {
- JCheckBox cb = new JCheckBox();
- cb.setSelected(true);
- return cb;
- }
- if (value instanceof Boolean)
+ pset = paramStore.getPreset(nextPreset);
+ }
+ if (pset != null)
+ {
+ if (pset.isModifiable())
{
- JCheckBox cb = new JCheckBox();
- cb.setSelected(((Boolean) value).booleanValue());
- return cb;
+ isUserPreset = true;
+ setDescr.setText(pset.getDescription());
+ updateTable(null, pset.getArguments());
+ lastParmSet = nextPreset;
}
- if (value instanceof String)
+ else
{
- JLabel lbl = new JLabel();
- lbl.setFont(new Font("Verdana", Font.PLAIN, 11));
- lbl.setText((String) value);
- return lbl;
+ isUserPreset = false;
+ setDescr.setText("");
+ // must be a default preset from service
+ updateTable(pset, null);
+ lastParmSet = nextPreset;
}
- if (value instanceof Parameter)
- {
- String val = ((Parameter) value).getDefaultValue();
- ValueConstrain constr = ((Parameter) value).getValidValue();
- JLabel lbl = new JLabel();
- lbl.setFont(new Font("Verdana", Font.PLAIN, 11));
- lbl.setText(val);
- return lbl;
- /*
- * type dependent return value if
- * (constr.getType().equals(Type.Integer))
- *
- * { lbl.setText(val); } if (constr.getType().equals(Type.Float)) { }
- * return lbl;
- */
- }
- return null;
}
+ else
+ {
+ isUserPreset = false;
+ // Service defaults
+ setDescr.setText("");
+ updateTable(null, null);
+ lastParmSet = SVC_DEF;
+ }
+
+ initArgSetModified();
+ syncSetNamesWithStore();
+ setName.setSelectedItem(lastParmSet);
+ SetNamePanel.validate();
+ validate();
+ settingDialog = false;
}
/**
- * testing method - grab a service and parameter set and show the window
- *
- * @param args
+ * Rebuild the AlignFrame web service menus (after add/delete of a preset
+ * option).
*/
- public static void main(String[] args)
+ protected void updateWebServiceMenus()
{
- jalview.ws.jws2.Jws2Discoverer disc = jalview.ws.jws2.Jws2Discoverer
- .getDiscoverer();
- int p = 0;
- if (args.length > 3)
+ for (AlignFrame alignFrame : Desktop.getAlignFrames())
{
- Vector<String> services = new Vector<String>();
- services.addElement(args[p++]);
- Jws2Discoverer.setServiceUrls(services);
+ alignFrame.BuildWebServiceMenu();
}
- try
- {
- disc.run();
- } catch (Exception e)
- {
- System.err.println("Aborting. Problem discovering services.");
- e.printStackTrace();
- return;
- }
- Jws2Discoverer.Jws2Instance lastserv = null;
- for (Jws2Discoverer.Jws2Instance service : disc.getServices())
+ }
+
+ String curSetName = null;
+
+ @Override
+ public void itemStateChanged(ItemEvent e)
+ {
+ if (e.getSource() == setName && e.getStateChange() == e.SELECTED)
{
- lastserv = service;
- if (p < args.length && service.serviceType.equalsIgnoreCase(args[p]))
+ final String setname = (String) setName.getSelectedItem();
+ if (Cache.isDebugEnabled())
{
- break;
+ Cache.debug("Item state changed for " + setname
+ + " (handling ? " + !settingDialog + ")");
}
- }
- if (lastserv != null)
- {
- Preset pr = null;
- if (++p < args.length)
+ if (settingDialog)
+ {
+ // ignore event
+ return;
+ }
+ if (setname == null)
+ {
+ return;
+ }
+ javax.swing.SwingUtilities.invokeLater(new Runnable()
{
- PresetManager prman = lastserv.getPresets();
- if (prman != null)
+ @Override
+ public void run()
{
- pr = prman.getPresetByName(args[p]);
- if (pr == null)
- {
- // just grab the last preset.
- List<Preset> prl = prman.getPresets();
- pr = prl.get(prl.size() - 1);
- }
+ doPreferenceComboStateChange(setname);
}
+ });
+ }
+ }
+
+ private void doPreferenceComboStateChange(String setname)
+ {
+ // user has selected a different item from combo-box
+ if (isModified())
+ {
+ String lsetname = (curSetName != null) ? curSetName : lastParmSet;
+ if (lsetname.equals(setname))
+ {
+ // setname was just edited - so ignore this event.
+ return;
}
- while (true)
- {
- WsJobParameters pgui = new WsJobParameters(lastserv, pr);
- JFrame jf = new JFrame("Parameters for " + lastserv.getActionText());
- JPanel cont = new JPanel();
- cont.setSize(new Dimension(600, 800));
- cont.add(pgui);
- jf.add(cont);
- final Thread thr = Thread.currentThread();
- jf.addWindowListener(new WindowListener()
- {
+ settingDialog = true;
+ System.out.println("Prompting to save " + lsetname);
+ if (JvOptionPane.showConfirmDialog(this, "Parameter set '" + lsetname
+ + "' is modifed, and your changes will be lost.\nReally change preset ?",
+ "Warning: Unsaved Changes",
+ JvOptionPane.OK_CANCEL_OPTION) != JvOptionPane.OK_OPTION)
+ {
+ // revert the combobox to the current item
+ settingDialog = true;
+ setName.setSelectedItem(lsetname);
+ settingDialog = false;
+ // and leave.
+ return;
+ // System.out.println("Saving for " + lsetname);
+ // _storeCurrentPreset(lsetname);
- @Override
- public void windowActivated(WindowEvent e)
- {
- // TODO Auto-generated method stub
+ }
+ }
+ settingDialog = true;
+ reInitDialog(setname);
+ settingDialog = false;
- }
+ }
- @Override
- public void windowClosed(WindowEvent e)
- {
- }
+ private void _renameExistingPreset(String oldName, String curSetName2)
+ {
+ paramStore.updatePreset(oldName, curSetName2, setDescr.getText(),
+ getJobParams());
+ }
- @Override
- public void windowClosing(WindowEvent e)
- {
- thr.interrupt();
+ /**
+ * store current settings as given name. You should then reset gui.
+ *
+ * @param curSetName2
+ */
+ private void _storeCurrentPreset(String curSetName2)
+ {
+ paramStore.storePreset(curSetName2, setDescr.getText(), getJobParams());
+ }
- }
+ private void _updatePreset(String lastParmSet2, String curname)
+ {
+ paramStore.updatePreset(lastParmSet2, curname, setDescr.getText(),
+ getJobParams());
- @Override
- public void windowDeactivated(WindowEvent e)
- {
- // TODO Auto-generated method stub
+ }
- }
+ /**
+ * last saved name for this user preset
+ */
+ String lastSetName = null;
- @Override
- public void windowDeiconified(WindowEvent e)
+ /**
+ * last saved value of the description text for this user preset
+ */
+ String lastDescrText = null;
+
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ if (e.getSource() instanceof Component)
+ {
+ Component src = (Component) e.getSource();
+ if (src.getParent() == setName)
+ {
+ // rename any existing records we know about for this set.
+ String newname = e.getActionCommand().trim();
+ String msg = null;
+ if (isServicePreset(newname))
+ {
+ final String oldname = curSetName != null ? curSetName
+ : lastParmSet;
+ final Component ourframe = this;
+ settingDialog = true;
+ setName.getEditor().setItem(oldname);
+ settingDialog = false;
+ javax.swing.SwingUtilities.invokeLater(new Runnable()
{
- // TODO Auto-generated method stub
+ @Override
+ public void run()
+ {
+ JvOptionPane.showMessageDialog(ourframe,
+ MessageManager.getString(
+ "label.invalid_name_preset_exists"),
+ MessageManager.getString("label.invalid_name"),
+ JvOptionPane.WARNING_MESSAGE);
+ }
+ });
- }
+ return;
+ }
+ curSetName = newname;
+ System.err.println("New name for user setting " + curSetName
+ + " (was " + setName.getSelectedItem() + ")");
+ if (curSetName.equals(setName.getSelectedItem()))
+ {
+ curSetName = null;
+ }
+ if (curSetName != null)
+ {
+ argSetModified(setName, true);
+ return;
+ }
- @Override
- public void windowIconified(WindowEvent e)
- {
- // TODO Auto-generated method stub
+ }
+ }
+ }
- }
+ private void checkDescrModified()
+ {
+ if (!settingDialog)
+ {
- @Override
- public void windowOpened(WindowEvent e)
- {
- // TODO Auto-generated method stub
+ argSetModified(setDescr,
+ (lastDescrText == null
+ ? setDescr.getText().trim().length() > 0
+ : !setDescr.getText().equals(lastDescrText)));
- }
+ }
+ }
- });
- jf.setVisible(true);
- boolean inter = false;
- while (!inter)
- {
- try
- {
- Thread.sleep(10000);
- } catch (Exception e)
- {
- inter = true;
- }
- ;
- }
- jf.dispose();
- }
+ @Override
+ public void insertUpdate(DocumentEvent e)
+ {
+ checkDescrModified();
+ }
+
+ @Override
+ public void removeUpdate(DocumentEvent e)
+ {
+ checkDescrModified();
+ }
+
+ @Override
+ public void changedUpdate(DocumentEvent e)
+ {
+ checkDescrModified();
+ }
+
+ /**
+ *
+ * @return null or the service preset selected by the user
+ */
+ public WsParamSetI getPreset()
+ {
+ if (isUserPreset || isModified()
+ || (lastParmSet != null && lastParmSet.equals(SVC_DEF)))
+ {
+ return null;
+ }
+ else
+ {
+ return paramStore.getPreset(lastParmSet);
}
}
}
git://source.jalview.org / jalview.git / blobdiff