+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ */
package jalview.gui;
+import jalview.gui.OptsAndParamsPage.OptionBox;
+import jalview.gui.OptsAndParamsPage.ParamBox;
+import jalview.ws.jws2.JabaParamStore;
+import jalview.ws.jws2.JabaPreset;
+import jalview.ws.jws2.Jws2Discoverer;
+import jalview.ws.jws2.Jws2Discoverer.Jws2Instance;
+import jalview.ws.params.ArgumentI;
+import jalview.ws.params.OptionI;
+import jalview.ws.params.ParamDatastoreI;
+import jalview.ws.params.ParameterI;
+import jalview.ws.params.ValueConstrainI;
+import jalview.ws.params.WsParamSetI;
+
import java.awt.BorderLayout;
-import java.awt.Color;
import java.awt.Component;
+import java.awt.Container;
import java.awt.Dimension;
import java.awt.FlowLayout;
import java.awt.Font;
+import java.awt.GridBagConstraints;
+import java.awt.GridBagLayout;
import java.awt.GridLayout;
import java.awt.Rectangle;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
-import java.awt.event.ComponentEvent;
-import java.awt.event.ComponentListener;
-import java.awt.event.ContainerEvent;
-import java.awt.event.ContainerListener;
import java.awt.event.ItemEvent;
import java.awt.event.ItemListener;
-import java.awt.event.KeyEvent;
-import java.awt.event.KeyListener;
import java.awt.event.MouseEvent;
import java.awt.event.MouseListener;
import java.awt.event.WindowEvent;
import java.awt.event.WindowListener;
-import java.awt.event.WindowStateListener;
+import java.net.URL;
import java.util.ArrayList;
-import java.util.EventObject;
-import java.util.HashSet;
import java.util.Hashtable;
import java.util.Iterator;
import java.util.List;
import javax.swing.JButton;
import javax.swing.JCheckBox;
import javax.swing.JComboBox;
+import javax.swing.JComponent;
import javax.swing.JDialog;
import javax.swing.JFrame;
import javax.swing.JLabel;
-import javax.swing.JList;
+import javax.swing.JMenuItem;
import javax.swing.JOptionPane;
import javax.swing.JPanel;
+import javax.swing.JPopupMenu;
import javax.swing.JScrollPane;
import javax.swing.JSlider;
import javax.swing.JSplitPane;
-import javax.swing.JTable;
+import javax.swing.JTabbedPane;
import javax.swing.JTextArea;
import javax.swing.JTextField;
-import javax.swing.ListSelectionModel;
-import javax.swing.SwingConstants;
-import javax.swing.SwingUtilities;
import javax.swing.border.TitledBorder;
-import javax.swing.event.CellEditorListener;
import javax.swing.event.ChangeEvent;
import javax.swing.event.ChangeListener;
-import javax.swing.table.*;
+import javax.swing.event.DocumentEvent;
+import javax.swing.event.DocumentListener;
import compbio.metadata.Argument;
import compbio.metadata.Option;
import compbio.metadata.Preset;
import compbio.metadata.PresetManager;
import compbio.metadata.RunnerConfig;
-import compbio.metadata.ValueConstrain;
-import compbio.metadata.WrongParameterException;
import compbio.metadata.ValueConstrain.Type;
-import jalview.ws.jws2.Jws2Discoverer;
-import jalview.ws.jws2.Jws2Discoverer.Jws2Instance;
-
+/**
+ * job parameter editing/browsing dialog box. User can browse existing settings
+ * (user + presets + Defaults), and any changes to parameters creates a modified
+ * user parameter set. LOGIC: If the parameter set is modified, and its name is
+ * a valid, non-existant user parameter set, then a save button is shown. If the
+ * parameter set is modified and its name is a valid, extant user parameter set,
+ * then an update button is shown. If user parameter set's name is edited, and
+ * old name exists as a writable user parameter set, then rename button is
+ * shown. If current parameter set is associated with a user defined parameter
+ * set, then : if set is modifed, a 'revert' button is shown. if set is not
+ * modified, a 'delete' button is shown.
+ *
+ * @author JimP
+ *
+ */
public class WsJobParameters extends JPanel implements ItemListener,
- ActionListener
+ ActionListener, DocumentListener, OptsParametersContainerI
{
- private static final int PARAM_WIDTH = 340, PARAM_HEIGHT = 150,
- PARAM_CLOSEDHEIGHT = 80;
+ URL linkImageURL = getClass().getResource("/images/link.gif");
+
+ private static final String SVC_DEF = "Defaults"; // this is the null
+ // parameter set as shown to
+ // user
+
+ /**
+ * manager for options and parameters.
+ */
+ OptsAndParamsPage opanp = new OptsAndParamsPage(this);
+
+ /**
+ * panel containing job options
+ */
+ JPanel jobOptions = new JPanel();
+
+ /**
+ * panel containing job parameters
+ */
+ JPanel paramList = new JPanel();
- private static final int OPTSET_HEIGHT = 30;
+
+
+ JPanel SetNamePanel = new JPanel();
JPanel setDetails = new JPanel();
JSplitPane jobPanel = new JSplitPane();
- JPanel jobOptions = new JPanel();
JScrollPane jobOptionsPane = new JScrollPane();
JPanel jobParameters = new JPanel();
- JButton savmodified = new JButton();
+ JButton createpref = new JButton();
- JButton renmodified = new JButton();
+ JButton deletepref = new JButton();
+
+ JButton revertpref = new JButton();
+
+ JButton updatepref = new JButton();
JButton startjob = new JButton();
JScrollPane paramPane = new JScrollPane();
- // JList paramList = new JList();
- JPanel paramList = new JPanel();
+
+ JPanel optsAndparams = new JPanel();
RunnerConfig serviceOptions;
- private BorderLayout jparamLayout;
+ ParamDatastoreI paramStore;
+
+ private int MAX_OPTWIDTH = 200;
WsJobParameters(Jws2Instance service)
{
this(service, null);
}
- public WsJobParameters(Jws2Instance service, Preset p)
+ public WsJobParameters(Jws2Instance service, WsParamSetI preset)
{
- this(null, service, p, null);
+ this(null, service, preset, null);
}
/**
* @param desktop
* - if null, create new JFrame outside of desktop
* @param service
- * @param p
+ * @param preset
+ */
+ public WsJobParameters(JFrame parent, Jws2Instance service,
+ WsParamSetI preset, List<Argument> jobArgset)
+ {
+ this(parent, null, service, preset, jobArgset);
+ }
+
+ /**
+ *
+ * @param parent
+ * @param paramStorei
+ * @param service
+ * @param preset
+ * @param jobArgset
*/
- public WsJobParameters(JFrame parent, Jws2Instance service, Preset p,
- List<Argument> jobArgset)
+ public WsJobParameters(JFrame parent, ParamDatastoreI paramStorei,
+ Jws2Instance service, WsParamSetI preset, List<Argument> jobArgset)
{
super();
jbInit();
+ this.paramStore = paramStorei;
+ if (paramStore == null)
+ {
+ paramStore = service.getParamStore();
+ }
+ this.service = service;
// argSetModified(false);
// populate parameter table
- initForService(service, p, jobArgset);
+ initForService(service, preset, jobArgset);
// display in new JFrame attached to parent.
validate();
}
JDialog frame = null;
+ /**
+ * shows a modal dialog containing the parameters.
+ *
+ * @return
+ */
public boolean showRunDialog()
{
frame.setTitle("Edit parameters for " + service.getActionText());
Rectangle deskr = Desktop.instance.getBounds();
- frame.setBounds(new Rectangle((int) (deskr.getCenterX() - 240),
- (int) (deskr.getCenterY() - 92), 380, 385));
+ Dimension pref = this.getPreferredSize();
+ frame.setBounds(new Rectangle((int) (deskr.getCenterX() - pref.width/2),
+ (int) (deskr.getCenterY() - pref.height/2), pref.width, pref.height));
frame.setContentPane(this);
+
+ // should perhaps recover defaults from user prefs.
- frame.setVisible(true);
+ frame.validate();
+ javax.swing.SwingUtilities.invokeLater(new Runnable()
+ {
+ public void run()
+ {
+ jobPanel.setDividerLocation(0.25);
+
+ }
+ });
+ frame.setVisible(true);
if (response > 0)
{
private void jbInit()
{
- savmodified.setText("Save");
- savmodified.setToolTipText("Not implemented yet :) ");
- savmodified.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
- savmodified.setForeground(Color.red);
- savmodified.setHorizontalAlignment(SwingConstants.RIGHT);
- savmodified.addActionListener(new ActionListener()
- {
+ updatepref = JvSwingUtils.makeButton("Update",
+ "Update this existing user parameter set.",
+ new ActionListener()
+ {
- public void actionPerformed(ActionEvent e)
- {
- savModified_actionPerformed(e);
- }
- });
- renmodified.setText("Rename");
- renmodified.setToolTipText("Not implemented yet :) ");
- renmodified.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
- renmodified.setForeground(Color.red);
- renmodified.setHorizontalAlignment(SwingConstants.CENTER);
- renmodified.addActionListener(new ActionListener()
- {
+ public void actionPerformed(ActionEvent e)
+ {
+ update_actionPerformed(e);
+ }
+ });
+ deletepref = JvSwingUtils.makeButton("Delete",
+ "Delete the currently selected user parameter set.",
+ new ActionListener()
+ {
- public void actionPerformed(ActionEvent e)
- {
- renModified_actionPerformed(e);
- }
- });
- renmodified.setVisible(false);
- startjob.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
- startjob.setText("Start");
- startjob.setToolTipText("Start Job");
- startjob.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- startjob_actionPerformed(e);
- }
- });
- canceljob.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
- canceljob.setText("Cancel");
- canceljob.setToolTipText("Cancel Job");
- canceljob.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- canceljob_actionPerformed(e);
- }
- });
+ public void actionPerformed(ActionEvent e)
+ {
+ delete_actionPerformed(e);
+ }
+ });
+ createpref = JvSwingUtils.makeButton("Create",
+ "Create a new parameter set with the current settings.",
+ new ActionListener()
+ {
+
+ public void actionPerformed(ActionEvent e)
+ {
+ create_actionPerformed(e);
+ }
+ });
+ revertpref = JvSwingUtils.makeButton("Revert",
+ "Undo all changes to the current parameter set",
+ new ActionListener()
+ {
+
+ public void actionPerformed(ActionEvent e)
+ {
+ revert_actionPerformed(e);
+ }
+ });
+ startjob = JvSwingUtils.makeButton("Start Job",
+ "Start Job with current settings.", new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ startjob_actionPerformed(e);
+ }
+ });
+ canceljob = JvSwingUtils.makeButton("Cancel Job",
+ "Close this dialog and cancel job.", new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ canceljob_actionPerformed(e);
+ }
+ });
setDetails.setBorder(new TitledBorder("Details"));
setDetails.setLayout(new BorderLayout());
setDescr.setWrapStyleWord(true);
setDescr.setLineWrap(true);
setDescr.setBackground(getBackground());
- setDescr.setEditable(false);
+ setDescr.setEditable(true);
+ setDescr.getDocument().addDocumentListener(this);
+ setDescr.setToolTipText("Click to edit the notes for this parameter set.");
JScrollPane setDescrView = new JScrollPane();
// setDescrView.setPreferredSize(new Dimension(350, 200));
setDescrView.getViewport().setView(setDescr);
setName.setEditable(true);
setName.addItemListener(this);
setName.getEditor().addActionListener(this);
- savmodified.setEnabled(false); // initially unmodified parameters
- // modified.setPreferredSize(new Dimension(15, 15));
- JPanel SetNamePanel = new JPanel();
- SetNamePanel.setLayout(new BorderLayout());
- SetNamePanel.add(setName, BorderLayout.WEST);
- SetNamePanel.add(renmodified, BorderLayout.CENTER);
- SetNamePanel.add(savmodified, BorderLayout.EAST);
- setDetails.add(SetNamePanel, BorderLayout.NORTH);
+ JPanel setNameInfo = new JPanel(new FlowLayout(FlowLayout.LEFT));
+ GridBagLayout gbl = new GridBagLayout();
+ SetNamePanel.setLayout(gbl);
+
+ JLabel setNameLabel = new JLabel("Current parameter set name :");
+ setNameLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
+
+ setNameInfo.add(setNameLabel);
+ setNameInfo.add(setName);
+
+ // initial button visibility
+ updatepref.setVisible(false);
+ deletepref.setVisible(false);
+ revertpref.setVisible(false);
+ createpref.setVisible(false);
+ JPanel setsavebuts = new JPanel();
+ setsavebuts.setLayout(new FlowLayout(FlowLayout.LEFT)); // GridLayout(1,2));
+ ((FlowLayout) setsavebuts.getLayout()).setHgap(10);
+ ((FlowLayout) setsavebuts.getLayout()).setVgap(0);
+ JPanel spacer = new JPanel();
+ spacer.setPreferredSize(new Dimension(2,30));
+ setsavebuts.add(spacer);
+ setsavebuts.add(deletepref);
+ setsavebuts.add(revertpref);
+ setsavebuts.add(createpref);
+ setsavebuts.add(updatepref);
+// setsavebuts.setSize(new Dimension(150, 30));
+ JPanel buttonArea = new JPanel(new GridLayout(1, 1));
+ buttonArea.add(setsavebuts);
+ SetNamePanel.add(setNameInfo);
+ GridBagConstraints gbc = new GridBagConstraints();
+ gbc.gridheight = 2;
+ gbl.setConstraints(setNameInfo, gbc);
+ SetNamePanel.add(buttonArea);
+ gbc = new GridBagConstraints();
+ gbc.gridx = 0;
+ gbc.gridy = 2;
+ gbc.gridheight = 1;
+ gbl.setConstraints(buttonArea, gbc);
setDetails.add(setDescrView, BorderLayout.CENTER);
- // setDetails.setPreferredSize(new Dimension(360, 100));
- jobParameters.setBorder(new TitledBorder("Parameters"));
- jobParameters.setLayout(jparamLayout = new BorderLayout());
- paramPane.setPreferredSize(new Dimension(360, 300));
- paramPane.getVerticalScrollBar().setUnitIncrement(20);
- // paramPanel.setPreferredSize(new Dimension(360, 300));
- // TODO: relayout buttons nicely
- paramPane.getViewport().setView(paramList);
- jobParameters.add(paramPane, BorderLayout.CENTER);
- JPanel jobOptionsPanel = new JPanel();
- jobOptionsPanel.setLayout(new BorderLayout());
- jobOptionsPanel.setBorder(new TitledBorder("Options"));
- jobOptionsPane.getViewport().setView(jobOptions);
- jobOptionsPanel.add(jobOptionsPane, BorderLayout.CENTER);
- settingsPanel.setLeftComponent(jobOptionsPanel);
- settingsPanel.setRightComponent(jobParameters);
- settingsPanel.setOrientation(JSplitPane.VERTICAL_SPLIT);
- settingsPanel.setDividerLocation(0.4);
+ jobParameters.setBorder(new TitledBorder("Parameters"));
+ paramPane.setPreferredSize(new Dimension(360, 400));
+ jobOptions.setBorder(new TitledBorder("Options"));
+
+ paramList.setBorder(new TitledBorder("Parameters"));
+
+ JPanel bjo=new JPanel(new BorderLayout()),bjp=new JPanel(new BorderLayout());
+ bjo.add(jobOptions, BorderLayout.CENTER);
+ bjp.add(paramList, BorderLayout.CENTER);
+ optsAndparams.setLayout(new BorderLayout());
+
+ optsAndparams.add(bjo, BorderLayout.CENTER);
+ optsAndparams.add(bjp, BorderLayout.SOUTH);
+ paramPane.setViewportView(optsAndparams);
+
setLayout(new BorderLayout());
- // setPreferredSize(new Dimension(400, 600));
- // setSize(new Dimension(400, 600));
jobPanel.setLeftComponent(setDetails);
- jobPanel.setRightComponent(settingsPanel);
+ jobPanel.setRightComponent(paramPane);
jobPanel.setOrientation(JSplitPane.VERTICAL_SPLIT);
- jobPanel.setDividerLocation(0.8);
+
+ add(SetNamePanel, BorderLayout.NORTH);
add(jobPanel, BorderLayout.CENTER);
+
JPanel dialogpanel = new JPanel();
dialogpanel.add(startjob);
dialogpanel.add(canceljob);
add(dialogpanel, BorderLayout.SOUTH);
}
- protected void renModified_actionPerformed(ActionEvent e)
+ protected void revert_actionPerformed(ActionEvent e)
{
+ reInitDialog(lastParmSet);
- // TODO Auto-generated method stub
- // save current prefs with new name and delete user pref with old name
+ }
+
+ protected void update_actionPerformed(ActionEvent e)
+ {
+ if (isUserPreset)
+ {
+ String curname = ((String) setName.getSelectedItem()).trim();
+ _updatePreset(lastParmSet, curname);
+ lastParmSet = curname;
+ isUserPreset = true;
+ initArgSetModified();
+ syncSetNamesWithStore();
+ }
+ }
+ private void _deleteUserPreset(String lastParmSet2)
+ {
+ paramStore.deletePreset(lastParmSet2);
}
- protected void savModified_actionPerformed(ActionEvent e)
+ protected void delete_actionPerformed(ActionEvent e)
{
- // TODO Auto-generated method stub
- // Store the current settings
- // write out param file and name.
- // update gui
- initArgSetModified(); // reset the modification state
+ if (isUserPreset)
+ {
+ // delete current preset's saved entry
+ _deleteUserPreset(lastParmSet);
+ }
+ reInitDialog(null); // service default
+ }
+ protected void create_actionPerformed(ActionEvent e)
+ {
+ String curname = ((String) setName.getSelectedItem()).trim();
+ if (curname.length() > 0)
+ {
+ _storeCurrentPreset(curname);
+ lastParmSet = curname;
+ isUserPreset = true;
+ initArgSetModified();
+ }
+ else
+ {
+ // TODO: show warning
+ System.err.println("Invalid name. Not saved.");
+ }
}
protected void canceljob_actionPerformed(ActionEvent e)
Jws2Instance service;
/**
+ * list of service presets in the gui
+ */
+ Hashtable servicePresets = null;
+
+ /**
* set if dialog is being set - so handlers will avoid spurious events
*/
boolean settingDialog = false;
- void initForService(Jws2Instance service, Preset p,
- List<Argument> jobArgset)
+ void initForService(Jws2Instance service, WsParamSetI jabap,
+ List<Argument> jabajobArgset)
{
+ WsParamSetI p = null;
+ List<ArgumentI> jobArgset = null;
settingDialog = true;
- this.service = service;
- // TODO: Recover window geometry prefs for this service
- // jobPanel.setDividerLocation(proportionalLocation)
- // settingsPanel.setDividerLocation(proportionalLocation)
+ { // instantiate the abstract proxy for Jaba objects
+ jobArgset = jabajobArgset == null ? null : JabaParamStore
+ .getJwsArgsfromJaba(jabajobArgset);
+ p = jabap; // (jabap != null) ? paramStore.getPreset(jabap.getName()) :
+ // null;
+ }
+
Hashtable exnames = new Hashtable();
- for (int i=0,iSize=setName.getItemCount(); i<iSize; i++)
+ for (int i = 0, iSize = setName.getItemCount(); i < iSize; i++)
{
- exnames.put((String) setName.getItemAt(i),setName.getItemAt(i));
+ exnames.put((String) setName.getItemAt(i), setName.getItemAt(i));
}
+ servicePresets = new Hashtable();
// Add the default entry - if not present already.
- if (!exnames.contains("Defaults"))
+ if (!exnames.contains(SVC_DEF))
{
- setName.addItem("Defaults");
- exnames.put("Defaults", "Defaults");
+ setName.addItem(SVC_DEF);
+ exnames.put(SVC_DEF, SVC_DEF);
+ servicePresets.put(SVC_DEF, SVC_DEF);
}
- serviceOptions = service.getRunnerConfig();
- // add any presets not already added.
String curname = (p == null ? "" : p.getName());
- PresetManager prman = service.getPresets();
- if (prman != null)
+ for (WsParamSetI pr : paramStore.getPresets())
{
- List prList = service.getPresets().getPresets();
- if (prList != null)
+ if (!pr.isModifiable())
{
- for (Object pr : prList)
- {
- if (!exnames.contains(((Preset) pr).getName()))
- {
- setName.addItem(((Preset) pr).getName());
- }
- }
+ servicePresets.put(pr.getName(), "preset");
+ }
+ else
+ {
+ }
+ if (!exnames.contains(pr.getName()))
+ {
+ setName.addItem(pr.getName());
+ }
+ }
+ // TODO: if initial jobArgset matches a given user setting or preset then
+ // should recover setting accordingly
+ // updateTable(p, jobArgset);
+ if (p != null)
+ {
+ reInitDialog(p.getName());
+ initArgSetModified();
+ }
+ else
+ {
+ if (jobArgset != null && jobArgset.size() > 0)
+ {
+ curSetName = "Supplied Settings";
+ updateTable(p, jobArgset);
+ }
+ else
+ {
+ curSetName = null;
+ reInitDialog(null);
}
}
- updateTable(p, jobArgset);
- initArgSetModified();
settingDialog = false;
}
@SuppressWarnings("unchecked")
- private void updateTable(Preset p, List<Argument> jobArgset)
+ private void updateTable(WsParamSetI p, List<ArgumentI> jobArgset)
{
- List<Parameter> setargs = new ArrayList<Parameter>();
// populate table from default parameter set.
- List<Argument> args = serviceOptions.getArguments();
+ List<ArgumentI> args = paramStore.getServiceParameters();
// split to params and required arguments
{
- for (Argument arg : args)
+ for (ArgumentI myarg : args)
{
- Argument myarg = (Argument) arg;
// Ideally, Argument would implement isRequired !
- if (myarg instanceof Parameter)
+ if (myarg instanceof ParameterI)
{
- Parameter parm = (Parameter) myarg;
- addParameter(parm);
+ ParameterI parm = (ParameterI) myarg;
+ paramList.add(opanp.addParameter(parm));
}
else
{
- if (myarg instanceof Option)
+ if (myarg instanceof OptionI)
{
- Option opt = (Option) myarg;
- addOption(opt);
- // Apply default value, always.
- selectOption(opt, opt.getDefaultValue());
+ OptionI opt = (OptionI) myarg;
+ OptionBox ob = opanp.addOption(opt);
+ jobOptions.add(ob, FlowLayout.LEFT);
+ ob.resetToDefault();
+ if (MAX_OPTWIDTH < ob.getPreferredSize().width)
+ {
+ MAX_OPTWIDTH = ob.getPreferredSize().width;
+ }
+
}
else
{
System.err.println("Ignoring unknown service argument type "
- + arg.getClass().getName());
+ + myarg.getClass().getName());
}
}
}
}
if (p != null)
{
+ isUserPreset = false;
// initialise setname
- setName.setSelectedItem(lastSetName=p.getName());
- setDescr.setText(lastDescrText=p.getDescription());
+ setName.setSelectedItem(lastSetName = p.getName());
+ setDescr.setText(lastDescrText = p.getDescription());
// TODO - URL link
try
{
- args = p.getArguments(serviceOptions);
- // quick test of getArguments
- for (Object rg: p.getOptions())
- {
- String _rg = ((String) rg).substring(1);// remove initial arg character -
- String _rgv = _rg;
- // select arg name
- int _rgs = _rg.indexOf(" ");
- if (_rgs>0)
- {
- _rgv = _rg.substring(_rgs+1);
- _rg = _rg.substring(0,_rgs);
- }
- boolean found=false;
- for (Argument ar:args)
- {
- if (ar.getName().equalsIgnoreCase(_rg) || ar.getDefaultValue()!=null && ar.getDefaultValue().equalsIgnoreCase(_rgv))
- {
- found = true;
- continue;
- }
- }
- if (!found)
- {
- System.err.println("Couldn't set Argument: "+rg.toString());
- }
- }
+ args = p.getArguments();
} catch (Exception e)
{
e.printStackTrace();
}
// TODO: check if args should be unselected prior to resetting using the
// preset
- setargs.clear();
}
else
{
if (lastParmSet == null)
{
+ isUserPreset = false;
// first call - so create a dummy name
- setName.setSelectedItem(lastSetName="Defaults");
+
+ setName.setSelectedItem(lastSetName = SVC_DEF);
}
}
// get setargs from current object
if (args != null)
{
- for (Argument arg : args)
+ for (ArgumentI arg : args)
{
- if (arg instanceof Parameter)
+ if (arg instanceof ParameterI)
{
- setargs.add((Parameter) arg);
+ opanp.setParameter((ParameterI) arg);
}
else
{
- if (arg instanceof Option)
+ if (arg instanceof OptionI)
{
- System.out.println("Setting option "+arg.getName()+" with "+arg.getDefaultValue());
- selectOption((Option) arg, arg.getDefaultValue());
+ // System.out.println("Setting option "
+ // + System.identityHashCode(arg) + ":" + arg.getName()
+ // + " with " + arg.getDefaultValue());
+ opanp.selectOption((OptionI) arg, arg.getValue());
}
}
}
}
- // mdl.setData(setargs);
- // jobOptions.setLayout(new GridLayout(optSet.size() / 2 + 1, 2));
- jobOptions.setPreferredSize(new Dimension(PARAM_WIDTH, optSet.size()
- * OPTSET_HEIGHT));
- jobOptions.setLayout(new GridLayout(optSet.size(), 1));
refreshParamLayout();
- // paramPanel.setLayout(new GridLayout(paramSet.size(), 1));
- // paramList.va
- // paramPane.getViewport().validate();
- paramPane.validate();
- validate();
+ revalidate();
}
private boolean isModified()
{
- return savmodified.isEnabled();
+ return modifiedElements.size() > 0;
}
private Hashtable modifiedElements = new Hashtable();
+
/**
* reset gui and modification state settings
*/
- private void initArgSetModified() {
+ private void initArgSetModified()
+ {
curSetName = null;
modifiedElements.clear();
- renmodified.setVisible(false);
- savmodified.setEnabled(false);
-
+ updateButtonDisplay();
}
- private void argSetModified(Object modifiedElement, boolean b)
+
+ private void updateButtonDisplay()
{
- if (!b)
- {
- modifiedElements.remove(modifiedElement);
- }
- else
+ boolean _update = false, _create = false, _delete = false, _revert = false;
+ if (modifiedElements.size() > 0)
{
- modifiedElements.put(modifiedElement, modifiedElement);
- }
- // set mod status based on presence of elements in table
- savmodified.setEnabled(modifiedElements.size() > 0);
- // special reveal if setName has been modified
- if (modifiedElements.get(setName) != null)
- {
- if (curSetName != null && lastSetName!=null && !lastSetName.equals(curSetName))
+ // set modified
+ _revert = true;
+ _update = isUserPreset; // can only update user presets
+ if (!isUserPreset || modifiedElements.containsKey(setName))
{
- // also test to see if lastSetName exists in preset store
- renmodified.setVisible(true);
+ // name modified - can create new preset
+ _create = true;
}
}
else
{
- // setname isn't in modlist - so don't rename
- renmodified.setEnabled(false);
+ // set unmodified
}
+ // can still delete a user preset
+ _delete = isUserPreset;
+
+ createpref.setVisible(_create);
+ updatepref.setVisible(_update);
+ deletepref.setVisible(_delete);
+ revertpref.setVisible(_revert);
validate();
}
- private void addParameter(Parameter parm)
+ public void argSetModified(Object modifiedElement, boolean b)
{
- ParamBox pb = paramSet.get(parm.getName());
- if (pb == null)
+ if (settingDialog)
{
- pb = new ParamBox(this, parm);
- paramSet.put(parm.getName(), pb);
- paramList.add(pb);
+ return;
}
- pb.init();
- // take the defaults from the parameter
- pb.updateControls(parm);
- }
-
- private void selectOption(Option opt, String string)
- {
- OptionBox cb = optSet.get(opt.getName());
- if (cb == null)
+ if (!b)
{
- cb = addOption(opt);
+ modifiedElements.remove(modifiedElement);
}
- if (string == null)
+ else
{
- // no value specified.
- if (opt.isRequired())
- {
- // indicate option needs to be selected!
- }
- else
+ if (b && modifiedElement == setName
+ && modifiedElements.contains(modifiedElement))
{
- cb.enabled.setSelected(false);
+ // HACK! prevents iteration on makeSetNameValid
+ b = false;
}
+ modifiedElements.put(modifiedElement, modifiedElement);
}
- else
+ // set mod status based on presence of elements in table
+ if (b && modifiedElements.size() > 0)
{
- cb.enabled.setSelected(true);
-
- if (opt.getPossibleValues().contains(string))
- {
- cb.val.setSelectedItem(string);
- }
- else
- {
- throw new Error("Invalid value " + string + " for option " + opt);
- }
-
+ makeSetNameValid(!isUserPreset);
+ SetNamePanel.revalidate();
}
- cb.setInitialValue();
+ updateButtonDisplay();
}
- Map<String, ParamBox> paramSet = new Hashtable<String, ParamBox>();
-
- public class ParamBox extends JPanel implements ChangeListener,
- ActionListener
+ private boolean isServicePreset(String selectedItem)
{
- JButton showDesc = new JButton();
-
- JTextArea string = new JTextArea();
-
- JScrollPane descPanel = new JScrollPane();
-
- JSlider slider = null;
-
- JTextField valueField = null;
-
- ValueConstrain validator = null;
-
- JPanel settingPanel = new JPanel();
-
- JPanel controlPanel = new JPanel();
-
- boolean integ = false;
-
- boolean choice = false;
-
- boolean descisvisible = false;
-
- final WsJobParameters pmdialogbox;
-
- public ParamBox(final WsJobParameters pmlayout, Parameter parm)
- {
- pmdialogbox = pmlayout;
- setPreferredSize(new Dimension(PARAM_WIDTH, PARAM_CLOSEDHEIGHT));
- setBorder(new TitledBorder(parm.getName()));
- setLayout(null);
- showDesc.setFont(new Font("Verdana", Font.PLAIN, 6));
- showDesc.setText("+");
- string.setFont(new Font("Verdana", Font.PLAIN, 11));
- string.setBackground(getBackground());
- // string.setSize(new Dimension(PARAM_WIDTH, 80));
- string.setEditable(false);
- descPanel.getViewport().setView(string);
- // descPanel.setLocation(2,17);
- descPanel.setVisible(false);
- // string.setMinimumSize(new Dimension(140,80));
- // string.setMaximumSize(new Dimension(280,80));
- final ParamBox me = this;
- showDesc.addActionListener(new ActionListener()
- {
-
- @Override
- public void actionPerformed(ActionEvent e)
- {
- descisvisible = !descisvisible;
- descPanel.setVisible(descisvisible);
- me.setPreferredSize(new Dimension(PARAM_WIDTH,
- (descisvisible) ? PARAM_HEIGHT : PARAM_CLOSEDHEIGHT));
- me.validate();
- pmlayout.refreshParamLayout();
- }
- });
- string.setWrapStyleWord(true);
- string.setLineWrap(true);
- string.setColumns(32);
- string.setText(parm.getDescription());
- JPanel firstrow = new JPanel();
- firstrow.setLayout(null);
- controlPanel.setLayout(new BorderLayout());
- controlPanel.setBounds(new Rectangle(39, 10, PARAM_WIDTH - 70,
- PARAM_CLOSEDHEIGHT - 50));
- showDesc.setBounds(new Rectangle(10, 10, 16, 16));
- firstrow.add(showDesc);
- firstrow.add(controlPanel);
- firstrow.setBounds(new Rectangle(10, 20, PARAM_WIDTH - 30,
- PARAM_CLOSEDHEIGHT - 30));
- add(firstrow);
- validator = parm.getValidValue();
- parameter = parm;
- if (validator != null)
- {
- integ = validator.getType() == Type.Integer;
- }
- else
- {
- if (parameter.getPossibleValues() != null)
- {
- choice = true;
- }
- }
- updateControls(parm);
- descPanel.setBounds(new Rectangle(10, PARAM_CLOSEDHEIGHT,
- PARAM_WIDTH - 20, PARAM_HEIGHT - PARAM_CLOSEDHEIGHT - 5));
- add(descPanel);
- validate();
- }
-
- public void init()
- {
- // reset the widget's initial value.
- lastVal = null;
- }
-
- boolean adjusting = false;
-
- Parameter parameter;
-
- JComboBox choicebox;
-
- public int getBoxHeight()
- {
- return (descisvisible ? PARAM_HEIGHT : PARAM_CLOSEDHEIGHT);
- }
-
- public void updateControls(Parameter parm)
- {
- adjusting = true;
- boolean init = (choicebox==null && valueField==null);
- float fVal = 0f;
- int iVal = 0;
- if (init)
- {
- if (choice)
- {
- choicebox = new JComboBox();
- choicebox.addActionListener(this);
- controlPanel.add(choicebox, BorderLayout.CENTER);
- }
- else
- {
- slider = new JSlider();
- slider.addChangeListener(this);
- valueField = new JTextField();
- valueField.addActionListener(this);
- valueField.setPreferredSize(new Dimension(60, 25));
- controlPanel.add(slider, BorderLayout.WEST);
- controlPanel.add(valueField, BorderLayout.EAST);
-
- }
- }
-
- if (parm != null)
- {
- if (choice)
- {
- if (init) {
- List vals = parm.getPossibleValues();
- for (Object val : vals)
- {
- choicebox.addItem(val);
- }
- }
-
- if (parm.getDefaultValue() != null)
- {
- choicebox.setSelectedItem(parm.getDefaultValue());
- }
- }
- else
- {
- valueField.setText(parm.getDefaultValue());
- }
- }
- lastVal = updateSliderFromValueField();
- adjusting = false;
- }
-
- Object lastVal;
+ return selectedItem.equals(SVC_DEF)
+ || servicePresets.containsKey(selectedItem);
+ }
- public Parameter getParameter()
+ /**
+ * check if the current set name is a valid set name for saving, if not, then
+ * fix it.
+ */
+ private void makeSetNameValid(boolean newuserset)
+ {
+ boolean stn = settingDialog;
+ boolean renamed = false;
+ settingDialog = true;
+ String nm = (curSetName != null ? curSetName : (String) setName
+ .getSelectedItem());
+ // check if the name is reserved - if it is, rename it.
+ if (isServicePreset(nm))
{
- try
- {
- if (choice)
- {
- parameter.setDefaultValue((String) choicebox.getSelectedItem());
- }
- else
- {
- parameter.setDefaultValue(valueField.getText());
- }
- } catch (WrongParameterException e)
- {
- e.printStackTrace();
- return null;
- }
- return parameter;
+ nm = "User " + nm;
+ renamed = true;
}
-
- public Object updateSliderFromValueField()
+ String tnm = nm;
+ if (newuserset)
{
- int iVal;
- float fVal;
- if (validator != null)
+ int i = 0;
+ while (paramStore.getPreset(tnm) != null)
{
- if (integ)
- {
- iVal = 0;
- try
- {
- valueField.setText(valueField.getText().trim());
- iVal = Integer.valueOf(valueField.getText());
- } catch (Exception e)
- {
- }
- ;
- if (validator.getMin() != null && validator.getMax() != null)
- {
- slider.getModel().setRangeProperties(iVal, 1,
- validator.getMin().intValue(),
- validator.getMax().intValue(), true);
- }
- else
- {
- slider.setVisible(false);
- }
- return new int[]
- { iVal };
- }
- else
- {
- fVal = 0f;
- try
- {
- fVal = Float.valueOf(valueField.getText());
- } catch (Exception e)
- {
- }
- ;
- if (validator.getMin() != null && validator.getMax() != null)
- {
- slider.getModel().setRangeProperties((int) fVal * 1000, 1,
- (int) validator.getMin().floatValue() * 1000,
- (int) validator.getMax().floatValue() * 1000, true);
- }
- else
- {
- slider.setVisible(false);
- }
- return new float[]
- { fVal };
- }
+ tnm = nm + " (" + (++i) + ")";
+ renamed = true;
}
- else
+ if (i > 0)
{
- if (!choice)
- {
- slider.setVisible(false);
- return new String[]
- { valueField.getText().trim() };
- }
- else
- {
- return new String[]
- { (String) choicebox.getSelectedItem() };
- }
+ nm = tnm;
}
-
}
- @Override
- public void stateChanged(ChangeEvent e)
+ boolean makeupdate = false;
+ // sync the gui with the preset database
+ for (int i = 0, iS = setName.getItemCount(); i < iS; i++)
{
- if (!adjusting)
+ String snm = (String) setName.getItemAt(i);
+ if (snm.equals(nm))
{
- valueField.setText(""
- + ((integ) ? ("" + (int) slider.getValue())
- : ("" + (float) (slider.getValue() / 1000f))));
- checkIfModified();
+ makeupdate = true;
+ // setName.setSelectedIndex(i);
}
-
}
-
- @Override
- public void actionPerformed(ActionEvent e)
+ if (!makeupdate)
{
- if (adjusting)
- {
- return;
- }
- if (!choice)
- {
- updateSliderFromValueField();
- }
- checkIfModified();
+ setName.addItem(curSetName = nm);
+ setName.setSelectedItem(curSetName);
}
-
- private void checkIfModified()
+ if (renamed)
{
- Object cstate = updateSliderFromValueField();
- boolean notmod = false;
- if (cstate.getClass() == lastVal.getClass())
- {
- if (cstate instanceof int[])
- {
- notmod = (((int[]) cstate)[0] == ((int[]) lastVal)[0]);
- }
- else if (cstate instanceof float[])
- {
- notmod = (((float[]) cstate)[0] == ((float[]) lastVal)[0]);
- }
- else if (cstate instanceof String[])
- {
- notmod = (((String[]) cstate)[0].equals(((String[]) lastVal)[0]));
- }
- }
- pmdialogbox.argSetModified(this, !notmod);
+ settingDialog = false; // we need this name change to be registered.
+ argSetModified(setName, renamed);
}
+ settingDialog = stn;
}
- Map<String, OptionBox> optSet = new Hashtable<String, OptionBox>();
- public class OptionBox extends JPanel implements ActionListener
+ public void refreshParamLayout()
{
- JComboBox val = new JComboBox();
-
- JCheckBox enabled = new JCheckBox();
-
- Option option;
-
- public OptionBox(Option opt)
- {
- option = opt;
- setLayout(new BorderLayout());
- enabled.setSelected(opt.isRequired()); // TODO: lock required options
- enabled.setFont(new Font("Verdana", Font.PLAIN, 11));
- enabled.setText(opt.getName());
- enabled.setToolTipText(opt.getDescription());
- enabled.addActionListener(this);
- add(enabled, BorderLayout.NORTH);
- if (opt.getPossibleValues().size() > 1)
- {
- setLayout(new GridLayout(1, 2));
- for (Object str : opt.getPossibleValues())
- {
- val.addItem((String) str);
- }
- val.setSelectedItem((String) opt.getDefaultValue());
- val.addActionListener(this);
- add(val, BorderLayout.SOUTH);
- }
- // TODO: add actionListeners for popup (to open further info),
- // and to update list of parameters if an option is enabled
- // that takes a value.
- setInitialValue();
- }
-
- boolean initEnabled = false;
-
- String initVal = null;
-
- public void setInitialValue()
+ FlowLayout fl = new FlowLayout(FlowLayout.LEFT);
+ int sep=fl.getVgap();
+ int os=0,s = jobOptions.getBorder().getBorderInsets(jobOptions).bottom+jobOptions.getBorder().getBorderInsets(jobOptions).top+2 * sep;
+ int w = 2 * fl.getHgap() + (MAX_OPTWIDTH > OptsAndParamsPage.PARAM_WIDTH ? MAX_OPTWIDTH : OptsAndParamsPage.PARAM_WIDTH);
+ jobOptions.setLayout(fl);
+ if (opanp.getOptSet().size() > 0)
{
- initEnabled = enabled.isSelected();
- if (option.getPossibleValues() != null
- && option.getPossibleValues().size() > 1)
+
+ for (OptionBox pbox : opanp.getOptSet().values())
{
- initVal = (String) val.getSelectedItem();
+ pbox.revalidate();
+ s += sep + pbox.getPreferredSize().height;
}
+ jobOptions.setPreferredSize(new Dimension(w, s));
+ jobOptions.setLayout(new GridLayout(opanp.getOptSet().size(),1));
+ os=s;
}
-
- public Option getOptionIfEnabled()
+ else
{
- if (!enabled.isSelected())
- {
- return null;
- }
- try
- {
- if (val.getSelectedItem() != null)
- {
- option.setDefaultValue((String) val.getSelectedItem());
- }
- } catch (WrongParameterException e)
- {
- e.printStackTrace();
- return null;
- }
- return option;
+ jobOptions.setVisible(false);
}
- @Override
- public void actionPerformed(ActionEvent e)
+ // Now layout the parameters assuming they occupy one column - to calculate total height of options+parameters
+ fl = new FlowLayout(FlowLayout.CENTER);
+ // helpful hint from http://stackoverflow.com/questions/2743177/top-alignment-for-flowlayout
+ fl.setAlignOnBaseline(true);
+ if (opanp.getParamSet().size() > 0)
{
- if (e.getSource() != enabled)
- {
- enabled.setSelected(true);
- }
- checkIfModified();
- }
+ paramList.setLayout(fl);
- private void checkIfModified()
- {
- boolean notmod = (initEnabled == enabled.isSelected());
- if (initVal != null)
+ s = 2 * sep;
+ for (ParamBox pbox : opanp.getParamSet().values())
{
- notmod = initVal.equals(val.getSelectedItem());
+ pbox.validate();
+ s += sep + pbox.getPreferredSize().height+pbox.getBorder().getBorderInsets(pbox).bottom;
}
- argSetModified(this, !notmod);
+
+ paramList.setPreferredSize(new Dimension(w, s));
+ os+=s+2*sep+paramList.getBorder().getBorderInsets(paramList).bottom+paramList.getBorder().getBorderInsets(paramList).top;
}
- }
-
- private OptionBox addOption(Option opt)
- {
- OptionBox cb = optSet.get(opt.getName());
- if (cb == null)
- {
- cb = new OptionBox(opt);
- optSet.put(opt.getName(), cb);
- jobOptions.add(cb);
- }
- return cb;
- }
-
- protected void refreshParamLayout()
- {
- int s = 100;
- for (ParamBox pbox : paramSet.values())
+ else
{
- s += pbox.getBoxHeight();
+ paramList.setVisible(false);
}
- paramList.setPreferredSize(new Dimension(PARAM_WIDTH, s));
- paramList.setLayout(new FlowLayout());
+ // TODO: waste some time trying to eliminate any unnecessary .validate calls here
+ paramList.validate();
+ jobOptions.validate();
+ // System.out.println("Size will be : "+w+","+os);
+ optsAndparams.validate();
+ paramPane.getViewport().validate();
+ paramPane.getVerticalScrollBar().setBlockIncrement(OptsAndParamsPage.PARAM_CLOSEDHEIGHT*2);
+ paramPane.validate();
validate();
}
jalview.ws.jws2.Jws2Discoverer disc = jalview.ws.jws2.Jws2Discoverer
.getDiscoverer();
int p = 0;
- if (args.length > 3)
+ if (args.length > 0)
{
Vector<String> services = new Vector<String>();
services.addElement(args[p++]);
for (Jws2Discoverer.Jws2Instance service : disc.getServices())
{
lastserv = service;
- if (p < args.length && service.serviceType.equalsIgnoreCase(args[p]))
+ if (p >= args.length || service.serviceType.equalsIgnoreCase(args[p]))
{
- break;
- }
- }
- if (lastserv != null)
- {
- List<Preset> prl = null;
- Preset pr = null;
- if (++p < args.length)
- {
- PresetManager prman = lastserv.getPresets();
- if (prman != null)
+ if (lastserv != null)
{
- pr = prman.getPresetByName(args[p]);
- if (pr == null)
+ List<Preset> prl = null;
+ Preset pr = null;
+ if (++p < args.length)
{
- // just grab the last preset.
- prl = prman.getPresets();
+ PresetManager prman = lastserv.getPresets();
+ if (prman != null)
+ {
+ pr = prman.getPresetByName(args[p]);
+ if (pr == null)
+ {
+ // just grab the last preset.
+ prl = prman.getPresets();
+ }
+ }
}
- }
- }
- Iterator<Preset> en = (prl == null) ? null : prl.iterator();
- while (true)
- {
- if (en != null)
- {
- if (!en.hasNext())
+ else
{
- en = prl.iterator();
+ PresetManager prman = lastserv.getPresets();
+ if (prman != null)
+ {
+ prl = prman.getPresets();
+ }
}
- pr = en.next();
- }
- WsJobParameters pgui = new WsJobParameters(lastserv, pr);
- JFrame jf = new JFrame("Parameters for " + lastserv.getActionText());
- JPanel cont = new JPanel();
- // jf.setPreferredSize(new Dimension(600, 800));
- cont.add(pgui);
- jf.add(cont);
- final Thread thr = Thread.currentThread();
- jf.addWindowListener(new WindowListener()
- {
-
- @Override
- public void windowActivated(WindowEvent e)
+ Iterator<Preset> en = (prl == null) ? null : prl.iterator();
+ while (en != null && en.hasNext())
{
- // TODO Auto-generated method stub
+ if (en != null)
+ {
+ if (!en.hasNext())
+ {
+ en = prl.iterator();
+ }
+ pr = en.next();
+ }
+ {
+ System.out.println("Testing opts dupes for "
+ + lastserv.getUri() + " : "
+ + lastserv.getActionText() + ":" + pr.getName());
+ List<Option> rg = lastserv.getRunnerConfig().getOptions();
+ for (Option o : rg)
+ {
+ try
+ {
+ Option cpy = jalview.ws.jws2.ParameterUtils.copyOption(o);
+ } catch (Exception e)
+ {
+ System.err.println("Failed to copy " + o.getName());
+ e.printStackTrace();
+ } catch (Error e)
+ {
+ System.err.println("Failed to copy " + o.getName());
+ e.printStackTrace();
+ }
+ }
+ }
+ {
+ System.out.println("Testing param dupes:");
+ List<Parameter> rg = lastserv.getRunnerConfig()
+ .getParameters();
+ for (Parameter o : rg)
+ {
+ try
+ {
+ Parameter cpy = jalview.ws.jws2.ParameterUtils
+ .copyParameter(o);
+ } catch (Exception e)
+ {
+ System.err.println("Failed to copy " + o.getName());
+ e.printStackTrace();
+ } catch (Error e)
+ {
+ System.err.println("Failed to copy " + o.getName());
+ e.printStackTrace();
+ }
+ }
+ }
+ {
+ System.out.println("Testing param write:");
+ List<String> writeparam = null, readparam = null;
+ try
+ {
+ writeparam = jalview.ws.jws2.ParameterUtils
+ .writeParameterSet(
+ pr.getArguments(lastserv.getRunnerConfig()),
+ " ");
+ System.out.println("Testing param read :");
+ List<Option> pset = jalview.ws.jws2.ParameterUtils
+ .processParameters(writeparam,
+ lastserv.getRunnerConfig(), " ");
+ readparam = jalview.ws.jws2.ParameterUtils
+ .writeParameterSet(pset, " ");
+ Iterator<String> o = pr.getOptions().iterator(), s = writeparam
+ .iterator(), t = readparam.iterator();
+ boolean failed = false;
+ while (s.hasNext() && t.hasNext())
+ {
+ String on = o.next(), sn = s.next(), st = t.next();
+ if (!sn.equals(st))
+ {
+ System.out.println("Original was " + on
+ + " Phase 1 wrote " + sn + "\tPhase 2 wrote "
+ + st);
+ failed = true;
+ }
+ }
+ if (failed)
+ {
+ System.out.println("Original parameters:\n"
+ + pr.getOptions());
+ System.out.println("Wrote parameters in first set:\n"
+ + writeparam);
+ System.out.println("Wrote parameters in second set:\n"
+ + readparam);
+
+ }
+ } catch (Exception e)
+ {
+ e.printStackTrace();
+ }
+ }
+ WsJobParameters pgui = new WsJobParameters(lastserv,
+ new JabaPreset(lastserv, pr));
+ JFrame jf = new JFrame("Parameters for "
+ + lastserv.getActionText());
+ JPanel cont = new JPanel(new BorderLayout());
+ pgui.validate();
+ cont.setPreferredSize(pgui.getPreferredSize());
+ cont.add(pgui, BorderLayout.CENTER);
+ jf.setLayout(new BorderLayout());
+ jf.add(cont, BorderLayout.CENTER);
+ jf.validate();
+ final Thread thr = Thread.currentThread();
+ jf.addWindowListener(new WindowListener()
+ {
- }
+ public void windowActivated(WindowEvent e)
+ {
+ // TODO Auto-generated method stub
- @Override
- public void windowClosed(WindowEvent e)
- {
- }
+ }
- @Override
- public void windowClosing(WindowEvent e)
- {
- thr.interrupt();
+ public void windowClosed(WindowEvent e)
+ {
+ }
- }
+ public void windowClosing(WindowEvent e)
+ {
+ thr.interrupt();
- @Override
- public void windowDeactivated(WindowEvent e)
- {
- // TODO Auto-generated method stub
+ }
- }
+ public void windowDeactivated(WindowEvent e)
+ {
+ // TODO Auto-generated method stub
- @Override
- public void windowDeiconified(WindowEvent e)
- {
- // TODO Auto-generated method stub
+ }
- }
+ public void windowDeiconified(WindowEvent e)
+ {
+ // TODO Auto-generated method stub
- @Override
- public void windowIconified(WindowEvent e)
- {
- // TODO Auto-generated method stub
+ }
- }
+ public void windowIconified(WindowEvent e)
+ {
+ // TODO Auto-generated method stub
- @Override
- public void windowOpened(WindowEvent e)
- {
- // TODO Auto-generated method stub
+ }
- }
+ public void windowOpened(WindowEvent e)
+ {
+ // TODO Auto-generated method stub
- });
- jf.setVisible(true);
- boolean inter = false;
- while (!inter)
- {
- try
- {
- Thread.sleep(10000);
- } catch (Exception e)
- {
- inter = true;
+ }
+
+ });
+ jf.setVisible(true);
+ boolean inter = false;
+ while (!inter)
+ {
+ try
+ {
+ Thread.sleep(10000);
+ } catch (Exception e)
+ {
+ inter = true;
+ }
+ ;
+ }
+ jf.dispose();
}
- ;
}
- jf.dispose();
}
}
}
- public List<Argument> getJobParams()
+ public List<ArgumentI> getJobParams()
+ {
+ return opanp.getCurrentSettings();
+ }
+
+ String lastParmSet = null;
+
+ /*
+ * Hashtable<String, Object[]> editedParams = new Hashtable<String,
+ * Object[]>();
+ *
+ * store the given parameters in the user parameter set database.
+ *
+ * @param storeSetName - lastParmSet
+ *
+ * @param descr - setDescr.getText()
+ *
+ * @param jobParams - getJobParams()
+ *
+ * private void _storeUserPreset(String storeSetName, String descr,
+ * List<ArgumentI> jobParams) { // this is a simple hash store. Object[] pset;
+ * editedParams.put(storeSetName, pset = new Object[3]); pset[0] =
+ * storeSetName; pset[1] = descr; pset[2] = jobParams; // writeParam("Saving "
+ * + storeSetName + ": ", jobParams); }
+ *
+ * private void writeParam(String nm, List<ArgumentI> params) { for (ArgumentI
+ * p : params) { System.out.println(nm + ":" + System.identityHashCode(p) +
+ * " Name: " + p.getName() + " Value: " + p.getDefaultValue()); } }
+ *
+ * private Object[] _getUserPreset(String setName) { Object[] pset =
+ * editedParams.get(setName); // if (pset != null) // writeParam("Retrieving "
+ * + setName + ": ", (List<Argument>) pset[2]); return pset; }
+ *
+ * * remove the given user preset from the preset stash
+ *
+ * @param setName
+ *
+ * private void _deleteUserPreset(String setName) {
+ * editedParams.remove(setName); }
+ */
+
+ private void syncSetNamesWithStore()
{
- List<Argument> argSet = new ArrayList<Argument>();
- // recover options and parameters from GUI
- for (OptionBox opts : optSet.values())
+ int n = 0;
+ // remove any set names in the drop down menu that aren't either a reserved
+ // setting, or a user defined or service preset.
+ Vector items = new Vector();
+ while (n < setName.getItemCount())
{
- Option opt = opts.getOptionIfEnabled();
- if (opt != null)
+ String item = (String) setName.getItemAt(n);
+ if (!item.equals(SVC_DEF) && !paramStore.presetExists(item))
+ {
+ setName.removeItemAt(n);
+ }
+ else
{
- argSet.add(opt);
+ items.addElement(item);
+ n++;
}
}
- for (ParamBox parambox : paramSet.values())
+ if (!items.contains(SVC_DEF))
{
- Parameter parm = parambox.getParameter();
- if (parm != null)
+ setName.addItem(SVC_DEF);
+ }
+ for (WsParamSetI upn : paramStore.getPresets())
+ {
+ if (!items.contains(upn.getName()))
{
- argSet.add(parm);
+ setName.addItem(upn.getName());
}
}
-
- return argSet;
}
- String lastParmSet = null;
-
- Hashtable<String, Object[]> editedParams = new Hashtable<String, Object[]>();
-
/**
- * store the given parameters in the user parameter set database.
- *
- * @param storeSetName
- * - lastParmSet
- * @param descr
- * - setDescr.getText()
- * @param jobParams
- * - getJobParams()
+ * true if lastParmSet is a user preset
*/
- private void _storeUserPreset(String storeSetName, String descr,
- List<Argument> jobParams)
- {
- // this is a simple hash store.
- Object[] pset;
- editedParams.put(storeSetName, pset = new Object[3]);
- pset[0] = storeSetName;
- pset[1] = descr;
- pset[2] = jobParams;
- }
-
- private Object[] _getUserPreset(String setName)
- {
- return editedParams.get(setName);
- }
+ boolean isUserPreset = false;
private void reInitDialog(String nextPreset)
{
settingDialog = true;
- // updateTable(null,null);
- Object[] pset = _getUserPreset(nextPreset);
- if (pset != null)
+ // updateTable(null,null); // first reset to defaults
+ WsParamSetI pset = null;
+ if (nextPreset != null && nextPreset.length() > 0)
{
- setDescr.setText((String) pset[1]);
- updateTable(null, (List<Argument>) pset[2]);
- lastParmSet = nextPreset;
- validate();
+ pset = paramStore.getPreset(nextPreset);
}
- else
+ if (pset != null)
{
- // must be a default preset from service
- Preset p = null;
- try
- {
- PresetManager prman = service.getPresets();
- if (prman != null)
- {
- p = prman.getPresetByName(nextPreset);
- }
- } catch (Exception ex)
+ if (pset.isModifiable())
{
- ex.printStackTrace();
+ isUserPreset = true;
+ setDescr.setText(pset.getDescription());
+ updateTable(null, pset.getArguments());
+ lastParmSet = nextPreset;
}
- if (p != null)
+ else
{
- updateTable(p, null);
+ isUserPreset = false;
+ setDescr.setText("");
+ // must be a default preset from service
+ updateTable(pset, null);
lastParmSet = nextPreset;
}
}
+ else
+ {
+ isUserPreset = false;
+ // Service defaults
+ setDescr.setText("");
+ updateTable(null, null);
+ lastParmSet = SVC_DEF;
+ }
+
initArgSetModified();
+ syncSetNamesWithStore();
+ setName.setSelectedItem(lastParmSet);
+ SetNamePanel.validate();
validate();
settingDialog = false;
String curSetName = null;
- @Override
public void itemStateChanged(ItemEvent e)
{
- if (settingDialog)
- {
- // ignore event
- return;
- }
- if (e.getSource() == setName)
+ if (e.getSource() == setName && e.getStateChange() == e.SELECTED)
{
- String setname = (String) setName.getSelectedItem();
+ final String setname = (String) setName.getSelectedItem();
+ System.out.println("Item state changed for " + setname
+ + " (handling ? " + !settingDialog + ")");
+ if (settingDialog)
+ {
+ // ignore event
+ return;
+ }
if (setname == null)
{
return;
}
- if (curSetName == null || !setname.equals(curSetName))
+ javax.swing.SwingUtilities.invokeLater(new Runnable()
{
- if (isModified())
+ public void run()
{
- raiseQueryAndSave();
+ doPreferenceComboStateChange(setname);
}
- reInitDialog(setname);
+ });
+ }
+ }
+
+ private void doPreferenceComboStateChange(String setname)
+ {
+ // user has selected a different item from combo-box
+ if (isModified())
+ {
+ String lsetname = (curSetName != null) ? curSetName : lastParmSet;
+ if (lsetname.equals(setname))
+ {
+ // setname was just edited - so ignore this event.
+ return;
+ }
+ settingDialog = true;
+ System.out.println("Prompting to save " + lsetname);
+ if (javax.swing.JOptionPane
+ .showConfirmDialog(
+ this,
+ "Parameter set '"
+ + lsetname
+ + "' is modifed, and your changes will be lost.\nReally change preset ?",
+ "Warning: Unsaved Changes",
+ javax.swing.JOptionPane.OK_CANCEL_OPTION) != JOptionPane.OK_OPTION)
+ {
+ // revert the combobox to the current item
+ settingDialog = true;
+ setName.setSelectedItem(lsetname);
+ settingDialog = false;
+ // and leave.
+ return;
+ // System.out.println("Saving for " + lsetname);
+ // _storeCurrentPreset(lsetname);
+
}
}
+ settingDialog = true;
+ reInitDialog(setname);
+ settingDialog = false;
+
+ }
+
+ private void _renameExistingPreset(String oldName, String curSetName2)
+ {
+ paramStore.updatePreset(oldName, curSetName2, setDescr.getText(),
+ getJobParams());
}
/**
- * ask the user if they wan't to save the current settings before switching
+ * store current settings as given name. You should then reset gui.
+ *
+ * @param curSetName2
*/
- private void raiseQueryAndSave()
+ private void _storeCurrentPreset(String curSetName2)
{
+ paramStore.storePreset(curSetName2, setDescr.getText(), getJobParams());
+ }
+
+ private void _updatePreset(String lastParmSet2, String curname)
+ {
+ paramStore.updatePreset(lastParmSet2, curname, setDescr.getText(),
+ getJobParams());
}
*/
String lastDescrText = null;
- @Override
public void actionPerformed(ActionEvent e)
{
if (e.getSource() instanceof Component)
if (src.getParent() == setName)
{
// rename any existing records we know about for this set.
- curSetName = (String) e.getActionCommand();
- System.err.println("Command " + curSetName + " : "
- + setName.getSelectedItem());
- if (curSetName.trim().equals(setName.getSelectedItem()))
+ String newname = (String) e.getActionCommand().trim();
+ String msg = null;
+ if (isServicePreset(newname))
{
- curSetName=null;
+ final String oldname = curSetName != null ? curSetName
+ : lastParmSet;
+ final Component ourframe = this;
+ settingDialog = true;
+ setName.getEditor().setItem(oldname);
+ settingDialog = false;
+ javax.swing.SwingUtilities.invokeLater(new Runnable()
+ {
+ public void run()
+ {
+ JOptionPane.showMessageDialog(ourframe,
+ "Invalid name - preset already exists.",
+ "Invalid name", JOptionPane.WARNING_MESSAGE);
+ }
+ });
+
+ return;
}
- if (curSetName!=null)
+ curSetName = newname;
+ System.err.println("New name for user setting " + curSetName
+ + " (was " + setName.getSelectedItem() + ")");
+ if (curSetName.equals(setName.getSelectedItem()))
{
- argSetModified(setName, lastSetName!=null || !curSetName.equals(lastSetName));
+ curSetName = null;
+ }
+ if (curSetName != null)
+ {
+ argSetModified(setName, true);
return;
}
}
}
- if (e.getSource() == setDescr)
+ }
+
+ private void checkDescrModified()
+ {
+ if (!settingDialog)
{
- if (lastDescrText != null)
- {
- argSetModified(setDescr, !setDescr.getText().equals(lastDescrText));
- }
+
+ argSetModified(
+ setDescr,
+ (lastDescrText == null ? setDescr.getText().trim().length() > 0
+ : !setDescr.getText().equals(lastDescrText)));
+
+ }
+ }
+
+ public void insertUpdate(DocumentEvent e)
+ {
+ checkDescrModified();
+ }
+
+ public void removeUpdate(DocumentEvent e)
+ {
+ checkDescrModified();
+ }
+
+ public void changedUpdate(DocumentEvent e)
+ {
+ checkDescrModified();
+ }
+
+ /**
+ *
+ * @return null or the service preset selected by the user
+ */
+ public WsParamSetI getPreset()
+ {
+ if (isUserPreset || isModified()
+ || (lastParmSet != null && lastParmSet.equals(SVC_DEF)))
+ {
+ return null;
+ }
+ else
+ {
+ return paramStore.getPreset(lastParmSet);
}
}
-}
\ No newline at end of file
+}
git://source.jalview.org / jalview.git / blobdiff