*/
package jalview.gui;
+import jalview.gui.OptsAndParamsPage.OptionBox;
+import jalview.gui.OptsAndParamsPage.ParamBox;
+import jalview.util.MessageManager;
+import jalview.ws.jws2.JabaParamStore;
+import jalview.ws.jws2.JabaPreset;
+import jalview.ws.jws2.Jws2Discoverer;
+import jalview.ws.jws2.ParameterUtils;
+import jalview.ws.jws2.jabaws2.Jws2Instance;
+import jalview.ws.params.ArgumentI;
+import jalview.ws.params.OptionI;
+import jalview.ws.params.ParamDatastoreI;
+import jalview.ws.params.ParameterI;
+import jalview.ws.params.WsParamSetI;
+
import java.awt.BorderLayout;
import java.awt.Component;
import java.awt.Dimension;
import compbio.metadata.PresetManager;
import compbio.metadata.RunnerConfig;
-import jalview.gui.OptsAndParamsPage.OptionBox;
-import jalview.gui.OptsAndParamsPage.ParamBox;
-import jalview.util.MessageManager;
-import jalview.ws.jws2.JabaParamStore;
-import jalview.ws.jws2.JabaPreset;
-import jalview.ws.jws2.Jws2Discoverer;
-import jalview.ws.jws2.jabaws2.Jws2Instance;
-import jalview.ws.params.ArgumentI;
-import jalview.ws.params.OptionI;
-import jalview.ws.params.ParamDatastoreI;
-import jalview.ws.params.ParameterI;
-import jalview.ws.params.WsParamSetI;
-
/**
* job parameter editing/browsing dialog box. User can browse existing settings
* (user + presets + Defaults), and any changes to parameters creates a modified
*/
public static void main(String[] args)
{
- jalview.ws.jws2.Jws2Discoverer disc = jalview.ws.jws2.Jws2Discoverer
- .getDiscoverer();
+ Jws2Discoverer disc = Jws2Discoverer.getDiscoverer();
int p = 0;
if (args.length > 0)
{
{
try
{
- Option cpy = jalview.ws.jws2.ParameterUtils.copyOption(o);
+ Option cpy = ParameterUtils.copyOption(o);
} catch (Exception e)
{
System.err.println("Failed to copy " + o.getName());
{
try
{
- Parameter cpy = jalview.ws.jws2.ParameterUtils
+ Parameter cpy = ParameterUtils
.copyParameter(o);
} catch (Exception e)
{
List<String> writeparam = null, readparam = null;
try
{
- writeparam = jalview.ws.jws2.ParameterUtils
+ writeparam = ParameterUtils
.writeParameterSet(
pr.getArguments(lastserv.getRunnerConfig()),
" ");
System.out.println("Testing param read :");
- List<Option> pset = jalview.ws.jws2.ParameterUtils
+ List<Option> pset = ParameterUtils
.processParameters(writeparam,
lastserv.getRunnerConfig(), " ");
- readparam = jalview.ws.jws2.ParameterUtils
+ readparam = ParameterUtils
.writeParameterSet(pset, " ");
Iterator<String> o = pr.getOptions().iterator(), s = writeparam
.iterator(), t = readparam.iterator();