import jalview.analysis.SeqsetUtils.SequenceInfo;
import jalview.api.AlignViewportI;
import jalview.bin.Cache;
+import jalview.bin.Console;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.AnnotatedCollectionI;
{
if (params == null || params.isEmpty())
{
- Cache.log.error("No parameters to HMMBuild!|");
+ Console.error("No parameters to HMMBuild!|");
return;
}
{
if (hmmFile.length() == 0L)
{
- Cache.log.error("Error: hmmbuild produced empty hmm file");
+ Console.error("Error: hmmbuild produced empty hmm file");
return;
}