JAL-3664 hmm related TODOs

[jalview.git] / src / jalview / hmmer / HMMBuild.java

diff --git a/src/jalview/hmmer/HMMBuild.java b/src/jalview/hmmer/HMMBuild.java
index 0c47c1d..0bda090 100644 (file)
--- a/src/jalview/hmmer/HMMBuild.java
+++ b/src/jalview/hmmer/HMMBuild.java
@@ -201,6 +201,7 @@ public class HMMBuild extends HmmerCommand
       // at import level ?
 
       SequenceI[] copyArray = copy.toArray(new SequenceI[copy.size()]);
+      // TODO: when copy contains the alignment sequences, you actually see the alignment sequences change to 'Sequence0'... if a redraw occurs!
       Hashtable sequencesHash = stashSequences(copyArray);
 
       exportStockholm(copyArray, alignmentFile, ac);