JAL-2629 hmmer searches now read domain rather than full scores

[jalview.git] / src / jalview / hmmer / HmmerCommand.java

diff --git a/src/jalview/hmmer/HmmerCommand.java b/src/jalview/hmmer/HmmerCommand.java
index b5698eb..f38be02 100644 (file)
--- a/src/jalview/hmmer/HmmerCommand.java
+++ b/src/jalview/hmmer/HmmerCommand.java
@@ -397,8 +397,8 @@ public abstract class HmmerCommand implements Runnable
   }
 
   /**
-   * Answers the HMM profile for the profile sequence the user selected (default
-   * is just the first HMM sequence in the alignment)
+   * Answers the query sequence the user selected (default is just the first
+   * sequence in the alignment)
    * 
    * @return
    */