Trim line

[jalview.git] / src / jalview / io / FastaFile.java

diff --git a/src/jalview/io/FastaFile.java b/src/jalview/io/FastaFile.java
index 2e203af..6d218f4 100755 (executable)
--- a/src/jalview/io/FastaFile.java
+++ b/src/jalview/io/FastaFile.java
@@ -76,6 +76,7 @@ public class FastaFile extends AlignFile
 \r
         while ((line = nextLine()) != null)\r
         {\r
+            line = line.trim();\r
             if (line.length() > 0)\r
             {\r
                 if (line.charAt(0)=='>')\r