Merge branch 'develop' into features/JAL-653_JAL-1766_htslib_refseqsupport

[jalview.git] / src / jalview / io / FeaturesFile.java

diff --git a/src/jalview/io/FeaturesFile.java b/src/jalview/io/FeaturesFile.java
index 498226b..c6bc1dd 100755 (executable)
--- a/src/jalview/io/FeaturesFile.java
+++ b/src/jalview/io/FeaturesFile.java
@@ -123,8 +123,7 @@ public class FeaturesFile extends AlignFile
    *          - process html strings into plain text
    * @return true if features were added
    */
-  public boolean parse(AlignmentI align, Hashtable colours,
-          boolean removeHTML)
+  public boolean parse(AlignmentI align, Map colours, boolean removeHTML)
   {
     return parse(align, colours, null, removeHTML, false);
   }
@@ -172,21 +171,18 @@ public class FeaturesFile extends AlignFile
   @Override
   public void addAnnotations(AlignmentI al)
   {
-    // TODO Auto-generated method stub
     super.addAnnotations(al);
   }
 
   @Override
   public void addProperties(AlignmentI al)
   {
-    // TODO Auto-generated method stub
     super.addProperties(al);
   }
 
   @Override
   public void addSeqGroups(AlignmentI al)
   {
-    // TODO Auto-generated method stub
     super.addSeqGroups(al);
   }