Merge branch 'features/r2_11_2_alphafold/JAL-629' into features/JAL-3858_PAEsInProjects

[jalview.git] / src / jalview / io / FileLoader.java

diff --git a/src/jalview/io/FileLoader.java b/src/jalview/io/FileLoader.java
index a4d4043..1b82213 100755 (executable)
--- a/src/jalview/io/FileLoader.java
+++ b/src/jalview/io/FileLoader.java
@@ -272,6 +272,7 @@ public class FileLoader implements Runnable
             ? "Copied From Clipboard"
             : file;
     Runtime rt = Runtime.getRuntime();
+
     try
     {
       if (Desktop.instance != null)
@@ -378,12 +379,12 @@ public class FileLoader implements Runnable
             {
               if (selectedFile == null)
               {
-                al = fa.readFile(file, protocol, format);
+                al = fa.readFile(null, file, protocol, format);
 
               }
               else
               {
-                al = fa.readFile(selectedFile, protocol, format);
+                al = fa.readFile(selectedFile, null, protocol, format);
               }
               source = fa.getAlignFile(); // keep reference for later if