/*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
-*/\r
+ * Jalview - A Sequence Alignment Editor and Viewer\r
+ * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ *\r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ *\r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
+ * GNU General Public License for more details.\r
+ *\r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
+ */\r
package jalview.io;\r
\r
import java.io.*;\r
-\r
import java.net.*;\r
\r
+public class FileParse\r
+{\r
+ public File inFile;\r
+ public int fileSize;\r
+ public int noLines;\r
+ protected String type;\r
+ protected BufferedReader dataIn;\r
\r
-public class FileParse {\r
- public File inFile;\r
- public int fileSize;\r
- public int noLines;\r
- protected String type;\r
- protected BufferedReader dataIn;\r
+ public FileParse()\r
+ {\r
+ }\r
\r
- public FileParse() {\r
- }\r
+ public FileParse(String fileStr, String type)\r
+ throws MalformedURLException, IOException\r
+ {\r
+ this.type = type;\r
\r
- public FileParse(String fileStr, String type)\r
- throws MalformedURLException, IOException {\r
- this.type = type;\r
-\r
- if (type.equals("File")) {\r
- this.inFile = new File(fileStr);\r
- this.fileSize = (int) inFile.length();\r
-\r
- dataIn = new BufferedReader(new FileReader(fileStr));\r
- } else if (type.equals("URL")) {\r
- URL url = new URL(fileStr);\r
- this.fileSize = 0;\r
- dataIn = new BufferedReader(new InputStreamReader(url.openStream()));\r
- } else if (type.equals("Paste")) {\r
- dataIn = new BufferedReader(new StringReader(fileStr));\r
- }\r
- }\r
+ if (type.equals("File"))\r
+ {\r
+ this.inFile = new File(fileStr);\r
+ this.fileSize = (int) inFile.length();\r
\r
- public String nextLine() throws IOException {\r
- String next = dataIn.readLine();\r
+ dataIn = new BufferedReader(new FileReader(fileStr));\r
+ }\r
+ else if (type.equals("URL"))\r
+ {\r
+ URL url = new URL(fileStr);\r
+ this.fileSize = 0;\r
+ dataIn = new BufferedReader(new InputStreamReader(url.openStream()));\r
+ }\r
+ else if (type.equals("Paste"))\r
+ {\r
+ dataIn = new BufferedReader(new StringReader(fileStr));\r
+ }\r
+ }\r
\r
- if (next != null) {\r
- noLines++;\r
- }\r
+ public String nextLine()\r
+ throws IOException\r
+ {\r
+ String next = dataIn.readLine();\r
\r
- return next;\r
+ if (next != null)\r
+ {\r
+ noLines++;\r
}\r
+\r
+ return next;\r
+ }\r
}\r
git://source.jalview.org / jalview.git / blobdiff