*/
package jalview.io;
-import jalview.exceptions.NoFileSelectedException;
+import jalview.bin.Cache;
import jalview.gui.AlignmentPanel;
-import jalview.gui.HTMLOptions;
+import jalview.gui.LineartOptions;
import jalview.gui.OOMWarning;
import jalview.math.AlignmentDimension;
import jalview.util.MessageManager;
import java.io.File;
import java.io.FileOutputStream;
import java.io.IOException;
+import java.util.concurrent.atomic.AtomicBoolean;
import org.jfree.graphics2d.svg.SVGGraphics2D;
import org.jfree.graphics2d.svg.SVGHints;
public class HtmlSvgOutput extends HTMLOutput
{
-
-
public HtmlSvgOutput(AlignmentPanel ap)
{
- super(ap);
- }
-
- @Override
- public void exportHTML(String outputFile)
- {
- exportStarted();
- try
- {
- if (outputFile == null)
- {
- outputFile = getOutputFile();
- }
- generatedFile = new File(outputFile);
- } catch (NoFileSelectedException e)
- {
- setProgressMessage(MessageManager.formatMessage(
- "status.cancelled_image_export_operation", "HTML"));
- return;
- } catch (Exception e)
- {
- setProgressMessage(MessageManager.formatMessage(
- "info.error_creating_file", "HTML"));
- e.printStackTrace();
- return;
- }
- new Thread(this).start();
- }
-
-
- static JalviewFileChooser getHTMLChooser()
- {
- return new jalview.io.JalviewFileChooser(
- jalview.bin.Cache.getProperty("LAST_DIRECTORY"),
- new String[] { "html" },
- new String[] { "Hypertext Markup Language" },
- "Hypertext Markup Language");
+ super(ap, "HTML");
}
public int printUnwrapped(int pwidth, int pheight, int pi,
return ap.printWrappedAlignment(pwidth, pheight, pi, pg[0]);
}
- private String getHtml(String titleSvg, String alignmentSvg,
+ String getHtml(String titleSvg, String alignmentSvg,
String jsonData, boolean wrapped)
{
StringBuilder htmlSvg = new StringBuilder();
htmlSvg.append("<html>\n");
if (jsonData != null)
{
- htmlSvg.append("<button onclick=\"javascipt:openJalviewUsingCurrentUrl();\">Launch in Jalview</button> ");
- htmlSvg.append("<input type=\"submit\" value=\"View raw BioJSON Data\" onclick=\"jQuery.facebox({ div:'#seqData' }); return false;\" />");
- htmlSvg.append("<div style=\"display: none;\" name=\"seqData\" id=\"seqData\" >"
- + jsonData + "</div>");
+ htmlSvg.append(
+ "<button onclick=\"javascipt:openJalviewUsingCurrentUrl();\">Launch in Jalview</button> ");
+ htmlSvg.append(
+ "<input type=\"submit\" value=\"View raw BioJSON Data\" onclick=\"jQuery.facebox({ div:'#seqData' }); return false;\" />");
+ htmlSvg.append(
+ "<div style=\"display: none;\" name=\"seqData\" id=\"seqData\" >"
+ + jsonData + "</div>");
htmlSvg.append("<br/> ");
}
htmlSvg.append("\n<style type=\"text/css\"> "
if (jsonData != null)
{
// facebox style sheet for displaying raw BioJSON data
- htmlSvg.append("#facebox { position: absolute; top: 0; left: 0; z-index: 100; text-align: left; }\n"
- + "#facebox .popup{ position:relative; border:3px solid rgba(0,0,0,0); -webkit-border-radius:5px;"
- + "-moz-border-radius:5px; border-radius:5px; -webkit-box-shadow:0 0 18px rgba(0,0,0,0.4); -moz-box-shadow:0 0 18px rgba(0,0,0,0.4);"
- + "box-shadow:0 0 18px rgba(0,0,0,0.4); }\n"
- + "#facebox .content { display:table; width: 98%; padding: 10px; background: #fff; -webkit-border-radius:4px; -moz-border-radius:4px;"
- + " border-radius:4px; }\n"
- + "#facebox .content > p:first-child{ margin-top:0; }\n"
- + "#facebox .content > p:last-child{ margin-bottom:0; }\n"
- + "#facebox .close{ position:absolute; top:5px; right:5px; padding:2px; background:#fff; }\n"
- + "#facebox .close img{ opacity:0.3; }\n"
- + "#facebox .close:hover img{ opacity:1.0; }\n"
- + "#facebox .loading { text-align: center; }\n"
- + "#facebox .image { text-align: center;}\n"
- + "#facebox img { border: 0; margin: 0; }\n"
- + "#facebox_overlay { position: fixed; top: 0px; left: 0px; height:100%; width:100%; }\n"
- + ".facebox_hide { z-index:-100; }\n"
- + ".facebox_overlayBG { background-color: #000; z-index: 99; }");
+ htmlSvg.append(
+ "#facebox { position: absolute; top: 0; left: 0; z-index: 100; text-align: left; }\n"
+ + "#facebox .popup{ position:relative; border:3px solid rgba(0,0,0,0); -webkit-border-radius:5px;"
+ + "-moz-border-radius:5px; border-radius:5px; -webkit-box-shadow:0 0 18px rgba(0,0,0,0.4); -moz-box-shadow:0 0 18px rgba(0,0,0,0.4);"
+ + "box-shadow:0 0 18px rgba(0,0,0,0.4); }\n"
+ + "#facebox .content { display:table; width: 98%; padding: 10px; background: #fff; -webkit-border-radius:4px; -moz-border-radius:4px;"
+ + " border-radius:4px; }\n"
+ + "#facebox .content > p:first-child{ margin-top:0; }\n"
+ + "#facebox .content > p:last-child{ margin-bottom:0; }\n"
+ + "#facebox .close{ position:absolute; top:5px; right:5px; padding:2px; background:#fff; }\n"
+ + "#facebox .close img{ opacity:0.3; }\n"
+ + "#facebox .close:hover img{ opacity:1.0; }\n"
+ + "#facebox .loading { text-align: center; }\n"
+ + "#facebox .image { text-align: center;}\n"
+ + "#facebox img { border: 0; margin: 0; }\n"
+ + "#facebox_overlay { position: fixed; top: 0px; left: 0px; height:100%; width:100%; }\n"
+ + ".facebox_hide { z-index:-100; }\n"
+ + ".facebox_overlayBG { background-color: #000; z-index: 99; }");
}
htmlSvg.append("</style>");
if (!wrapped)
{
- htmlSvg.append("<div class=\"main-container\" \n>");
- htmlSvg.append("<div class=\"titlex\">\n");
- htmlSvg.append("<div class=\"sub-category-container\"> \n");
- htmlSvg.append(titleSvg);
- htmlSvg.append("</div>");
- htmlSvg.append("</div>\n\n<!-- ========================================================================================== -->\n\n");
- htmlSvg.append("<div class=\"align\" >");
- htmlSvg.append(
- "<div class=\"sub-category-container\"> <div style=\"overflow-x: scroll;\">")
- .append(alignmentSvg).append("</div></div>").append("</div>");
- htmlSvg.append("</div>");
+ htmlSvg.append("<div class=\"main-container\" \n>");
+ htmlSvg.append("<div class=\"titlex\">\n");
+ htmlSvg.append("<div class=\"sub-category-container\"> \n");
+ htmlSvg.append(titleSvg);
+ htmlSvg.append("</div>");
+ htmlSvg.append(
+ "</div>\n\n<!-- ========================================================================================== -->\n\n");
+ htmlSvg.append("<div class=\"align\" >");
+ htmlSvg.append(
+ "<div class=\"sub-category-container\"> <div style=\"overflow-x: scroll;\">")
+ .append(alignmentSvg).append("</div></div>").append("</div>");
+ htmlSvg.append("</div>");
- htmlSvg.append("<script language=\"JavaScript\" type=\"text/javascript\" src=\"http://ajax.googleapis.com/ajax/libs/jquery/1/jquery.min.js\"></script>\n"
- + "<script language=\"JavaScript\" type=\"text/javascript\" src=\"http://ajax.googleapis.com/ajax/libs/jqueryui/1.11.2/jquery-ui.min.js\"></script>\n"
- + "<script>\n"
- + "var subCatContainer = $(\".sub-category-container\");\n"
- + "subCatContainer.scroll(\nfunction() {\n"
- + "subCatContainer.scrollTop($(this).scrollTop());\n});\n");
+ htmlSvg.append(
+ "<script language=\"JavaScript\" type=\"text/javascript\" src=\"http://ajax.googleapis.com/ajax/libs/jquery/1/jquery.min.js\"></script>\n"
+ + "<script language=\"JavaScript\" type=\"text/javascript\" src=\"http://ajax.googleapis.com/ajax/libs/jqueryui/1.11.2/jquery-ui.min.js\"></script>\n"
+ + "<script>\n"
+ + "var subCatContainer = $(\".sub-category-container\");\n"
+ + "subCatContainer.scroll(\nfunction() {\n"
+ + "subCatContainer.scrollTop($(this).scrollTop());\n});\n");
- htmlSvg.append("</script>\n");
+ htmlSvg.append("</script>\n");
}
else
{
- htmlSvg.append("<div>\n")
- .append(alignmentSvg).append("</div>");
- htmlSvg.append("<script language=\"JavaScript\" type=\"text/javascript\" src=\"http://ajax.googleapis.com/ajax/libs/jquery/1/jquery.min.js\"></script>\n"
- + "<script language=\"JavaScript\" type=\"text/javascript\" src=\"http://ajax.googleapis.com/ajax/libs/jqueryui/1.11.2/jquery-ui.min.js\"></script>\n");
+ htmlSvg.append("<div>\n").append(alignmentSvg).append("</div>");
+ htmlSvg.append(
+ "<script language=\"JavaScript\" type=\"text/javascript\" src=\"http://ajax.googleapis.com/ajax/libs/jquery/1/jquery.min.js\"></script>\n"
+ + "<script language=\"JavaScript\" type=\"text/javascript\" src=\"http://ajax.googleapis.com/ajax/libs/jqueryui/1.11.2/jquery-ui.min.js\"></script>\n");
}
// javascript for launching file in Jalview
htmlSvg.append("<script language=\"JavaScript\">\n");
htmlSvg.append("function openJalviewUsingCurrentUrl(){\n");
- htmlSvg.append(" var json = JSON.parse(document.getElementById(\"seqData\").innerHTML);\n");
- htmlSvg.append(" var jalviewVersion = json['appSettings'].version;\n");
+ htmlSvg.append(
+ " var json = JSON.parse(document.getElementById(\"seqData\").innerHTML);\n");
+ htmlSvg.append(
+ " var jalviewVersion = json['appSettings'].version;\n");
htmlSvg.append(" var url = json['appSettings'].webStartUrl;\n");
- htmlSvg.append(" var myForm = document.createElement(\"form\");\n\n");
+ htmlSvg.append(
+ " var myForm = document.createElement(\"form\");\n\n");
htmlSvg.append(" var heap = document.createElement(\"input\");\n");
htmlSvg.append(" heap.setAttribute(\"name\", \"jvm-max-heap\") ;\n");
htmlSvg.append(" heap.setAttribute(\"value\", \"2G\");\n\n");
htmlSvg.append(" var target = document.createElement(\"input\");\n");
htmlSvg.append(" target.setAttribute(\"name\", \"open\");\n");
htmlSvg.append(" target.setAttribute(\"value\", document.URL);\n\n");
- htmlSvg.append(" var jvVersion = document.createElement(\"input\");\n");
+ htmlSvg.append(
+ " var jvVersion = document.createElement(\"input\");\n");
htmlSvg.append(" jvVersion.setAttribute(\"name\", \"version\") ;\n");
- htmlSvg.append(" jvVersion.setAttribute(\"value\", jalviewVersion);\n\n");
+ htmlSvg.append(
+ " jvVersion.setAttribute(\"value\", jalviewVersion);\n\n");
htmlSvg.append(" myForm.action = url;\n");
htmlSvg.append(" myForm.appendChild(heap);\n");
htmlSvg.append(" myForm.appendChild(target);\n");
@Override
public boolean isEmbedData()
{
- return Boolean.valueOf(jalview.bin.Cache.getDefault(
- "EXPORT_EMBBED_BIOJSON", "true"));
+ return Boolean.valueOf(
+ Cache.getDefault("EXPORT_EMBBED_BIOJSON", "true"));
}
@Override
}
@Override
- public File getExportedFile()
- {
- return generatedFile;
- }
-
- @Override
public void run()
{
try
{
- setProgressMessage(null);
- setProgressMessage(MessageManager.formatMessage(
- "status.exporting_alignment_as_x_file", "HTML"));
- AlignmentDimension aDimension = ap.getAlignmentDimension();
- SVGGraphics2D idPanelGraphics = new SVGGraphics2D(
- aDimension.getWidth(), aDimension.getHeight());
- SVGGraphics2D alignPanelGraphics = new SVGGraphics2D(
- aDimension.getWidth(), aDimension.getHeight());
-
- String renderStyle = jalview.bin.Cache.getDefault("HTML_RENDERING",
+ String renderStyle = Cache.getDefault("HTML_RENDERING",
"Prompt each time");
+ AtomicBoolean textOption = new AtomicBoolean(
+ !"Lineart".equals(renderStyle));
- // If we need to prompt, and if the GUI is visible then
- // Prompt for rendering style
- if (renderStyle.equalsIgnoreCase("Prompt each time") && !isHeadless())
+ /*
+ * configure the action to run on OK in the dialog
+ */
+ Runnable okAction = new Runnable()
{
- HTMLOptions svgOption = new HTMLOptions();
- renderStyle = svgOption.getValue();
-
- if (renderStyle == null || svgOption.cancelled)
+ @Override
+ public void run()
{
- setProgressMessage(MessageManager.formatMessage(
- "status.cancelled_image_export_operation", "HTML"));
- return;
+ doOutput(textOption.get());
}
+ };
+
+ /*
+ * Prompt for character rendering style if preference is not set
+ */
+ if (renderStyle.equalsIgnoreCase("Prompt each time") && !isHeadless())
+ {
+ LineartOptions svgOption = new LineartOptions("HTML", textOption);
+ svgOption.setResponseAction(1, new Runnable()
+ {
+ @Override
+ public void run()
+ {
+ setProgressMessage(MessageManager.formatMessage(
+ "status.cancelled_image_export_operation",
+ getDescription()));
+ }
+ });
+ svgOption.setResponseAction(0, okAction);
+ svgOption.showDialog();
+ /* no code here - JalviewJS cannot execute it */
}
+ else
+ {
+ /*
+ * else (if preference set) just do the export action
+ */
+ doOutput(textOption.get());
+ }
+ } catch (OutOfMemoryError err)
+ {
+ System.out.println("########################\n" + "OUT OF MEMORY "
+ + generatedFile + "\n" + "########################");
+ new OOMWarning("Creating Image for " + generatedFile, err);
+ } catch (Exception e)
+ {
+ e.printStackTrace();
+ setProgressMessage(MessageManager
+ .formatMessage("info.error_creating_file", getDescription()));
+ }
+ }
- if (renderStyle.equalsIgnoreCase("Lineart"))
+ /**
+ * Builds and writes the image to the file specified by field
+ * <code>generatedFile</code>
+ *
+ * @param textCharacters
+ * true for Text character rendering, false for Lineart
+ */
+ protected void doOutput(boolean textCharacters)
+ {
+ try
+ {
+ AlignmentDimension aDimension = ap.getAlignmentDimension();
+ SVGGraphics2D idPanelGraphics = new SVGGraphics2D(
+ aDimension.getWidth(), aDimension.getHeight());
+ SVGGraphics2D alignPanelGraphics = new SVGGraphics2D(
+ aDimension.getWidth(), aDimension.getHeight());
+ if (!textCharacters) // Lineart selected
{
- idPanelGraphics.setRenderingHint(SVGHints.KEY_DRAW_STRING_TYPE,
+ idPanelGraphics.setRenderingHint(
+ SVGHints.KEY_DRAW_STRING_TYPE,
SVGHints.VALUE_DRAW_STRING_TYPE_VECTOR);
- alignPanelGraphics.setRenderingHint(SVGHints.KEY_DRAW_STRING_TYPE,
+ alignPanelGraphics.setRenderingHint(
+ SVGHints.KEY_DRAW_STRING_TYPE,
SVGHints.VALUE_DRAW_STRING_TYPE_VECTOR);
}
if (ap.av.getWrapAlignment())
}
else
{
- printUnwrapped(aDimension.getWidth(), aDimension.getHeight(), 0,
- idPanelGraphics, alignPanelGraphics);
+ printUnwrapped(aDimension.getWidth(), aDimension.getHeight(),
+ 0, idPanelGraphics, alignPanelGraphics);
}
String idPanelSvgData = idPanelGraphics.getSVGDocument();
out.write(htmlData.getBytes());
out.flush();
out.close();
- setProgressMessage(MessageManager.formatMessage(
- "status.export_complete", "HTML"));
+ setProgressMessage(MessageManager
+ .formatMessage("status.export_complete", getDescription()));
exportCompleted();
- } catch (OutOfMemoryError err)
- {
- System.out.println("########################\n" + "OUT OF MEMORY "
- + generatedFile + "\n" + "########################");
- new OOMWarning("Creating Image for " + generatedFile, err);
} catch (Exception e)
{
e.printStackTrace();
- setProgressMessage(MessageManager.formatMessage(
- "info.error_creating_file", "HTML"));
+ setProgressMessage(MessageManager
+ .formatMessage("info.error_creating_file", getDescription()));
}
}
}
git://source.jalview.org / jalview.git / blobdiff