JAL-3691 toUpperCase(Locale.ROOT) for all standard file format operations

[jalview.git] / src / jalview / io / JPredFile.java

diff --git a/src/jalview/io/JPredFile.java b/src/jalview/io/JPredFile.java
index 6732e82..8f93b48 100755 (executable)
--- a/src/jalview/io/JPredFile.java
+++ b/src/jalview/io/JPredFile.java
@@ -33,6 +33,7 @@ import jalview.util.MessageManager;
 
 import java.io.IOException;
 import java.util.Hashtable;
+import java.util.Locale;
 import java.util.StringTokenizer;
 import java.util.Vector;
 
@@ -408,7 +409,7 @@ public class JPredFile extends AlignFile
     // check that no stray annotations have been added at the end.
     {
       SequenceI sq = seqs.elementAt(j - 1);
-      if (sq.getName().toUpperCase().startsWith("JPRED"))
+      if (sq.getName().toUpperCase(Locale.ROOT).startsWith("JPRED"))
       {
         annotSeqs.addElement(sq);
         seqs.removeElementAt(--j);