JAL-1499 patch from Mungo Carstairs

[jalview.git] / src / jalview / io / JalviewFileChooser.java

diff --git a/src/jalview/io/JalviewFileChooser.java b/src/jalview/io/JalviewFileChooser.java
old mode 100755 (executable)
new mode 100644 (file)
index 90e3229..068dca7
--- a/src/jalview/io/JalviewFileChooser.java
+++ b/src/jalview/io/JalviewFileChooser.java
@@ -23,12 +23,22 @@ package jalview.io;
 
 import jalview.util.MessageManager;
 
-import java.io.*;
-import java.util.*;
-
-import java.awt.*;
-import java.awt.event.*;
-import javax.swing.*;
+import java.awt.Component;
+import java.awt.Dimension;
+import java.awt.EventQueue;
+import java.awt.HeadlessException;
+import java.awt.event.MouseAdapter;
+import java.awt.event.MouseEvent;
+import java.io.File;
+import java.util.StringTokenizer;
+import java.util.Vector;
+
+import javax.swing.DefaultListCellRenderer;
+import javax.swing.JFileChooser;
+import javax.swing.JList;
+import javax.swing.JOptionPane;
+import javax.swing.JPanel;
+import javax.swing.JScrollPane;
 
 /**
  * Enhanced file chooser dialog box.
@@ -104,6 +114,7 @@ public class JalviewFileChooser extends JFileChooser
     setAccessory(new RecentlyOpened());
   }
 
+  @Override
   public void setFileFilter(javax.swing.filechooser.FileFilter filter)
   {
     super.setFileFilter(filter);
@@ -122,6 +133,7 @@ public class JalviewFileChooser extends JFileChooser
 
         EventQueue.invokeLater(new Thread()
         {
+          @Override
           public void run()
           {
             String currentName = ui.getFileName();
@@ -176,10 +188,15 @@ public class JalviewFileChooser extends JFileChooser
     {
       format = "PFAM";
     }
+    else if (format.toUpperCase().startsWith("MEGA"))
+    {
+      format = "MEGA";
+    }
 
     return format;
   }
 
+  @Override
   public int showSaveDialog(Component parent) throws HeadlessException
   {
     this.setAccessory(null);
@@ -265,6 +282,7 @@ public class JalviewFileChooser extends JFileChooser
 
       list.addMouseListener(new MouseAdapter()
       {
+        @Override
         public void mousePressed(MouseEvent evt)
         {
           recentListSelectionChanged(list.getSelectedValue());
@@ -279,6 +297,7 @@ public class JalviewFileChooser extends JFileChooser
 
       javax.swing.SwingUtilities.invokeLater(new Runnable()
       {
+        @Override
         public void run()
         {
           scroller.getHorizontalScrollBar().setValue(