Jalview 2.6 source licence

[jalview.git] / src / jalview / io / ModellerDescription.java

diff --git a/src/jalview/io/ModellerDescription.java b/src/jalview/io/ModellerDescription.java
index 5652a25..b590a6d 100755 (executable)
--- a/src/jalview/io/ModellerDescription.java
+++ b/src/jalview/io/ModellerDescription.java
@@ -1,20 +1,19 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
  * 
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
  * 
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
  * 
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  */
 package jalview.io;
 
@@ -216,7 +215,7 @@ public class ModellerDescription
    * make a possibly updated modeller field line for the sequence object
    * 
    * @param seq
-   *                SequenceI
+   *          SequenceI
    */
   ModellerDescription(SequenceI seq)
   {
@@ -246,7 +245,7 @@ public class ModellerDescription
       setStartCode(seq.getStart());
       setEndCode(seq.getEnd());
       fields.put(Fields[LOCALID], seq.getName()); // this may be overwritten
-                                                  // below...
+      // below...
       // type - decide based on evidence of PDB database references - this also
       // sets the local reference field
       int t = 0; // sequence
@@ -378,7 +377,7 @@ public class ModellerDescription
    * returns true if sequence object was modifed with a valid modellerField set
    * 
    * @param newSeq
-   *                SequenceI
+   *          SequenceI
    * @return boolean
    */
   boolean updateSequenceI(SequenceI newSeq)