isAligned assertion (bug 0008144)

[jalview.git] / src / jalview / io / VamsasAppDatastore.java

diff --git a/src/jalview/io/VamsasAppDatastore.java b/src/jalview/io/VamsasAppDatastore.java
index e313470..ac00b33 100644 (file)
--- a/src/jalview/io/VamsasAppDatastore.java
+++ b/src/jalview/io/VamsasAppDatastore.java
@@ -717,7 +717,7 @@ public class VamsasAppDatastore
 
   /**
    * very quick test to see if the viewport would be stored in the vamsas document.
-   * Reasons for not storing include the unaligned flag being false.
+   * Reasons for not storing include the unaligned flag being false (for all sequences, including the hidden ones!)
    * @param av
    * @return true if alignment associated with this view will be stored in document.
    */