JAL-1628 employ new AnnotationFile reader method to allow the current view's ColumnSe...

[jalview.git] / src / jalview / io / packed / ParsePackedSet.java

diff --git a/src/jalview/io/packed/ParsePackedSet.java b/src/jalview/io/packed/ParsePackedSet.java
index df1acf1..8980e2c 100644 (file)
--- a/src/jalview/io/packed/ParsePackedSet.java
+++ b/src/jalview/io/packed/ParsePackedSet.java
@@ -123,8 +123,9 @@ public class ParsePackedSet
           {
             br = new BufferedReader(src.getReader());
           }
+          // TODO: add columnSelection to context
           if (new jalview.io.AnnotationFile().parseAnnotationFrom(
-                  context.getLastAlignment(), br))
+                  context.getLastAlignment(), null, br))
           {
             context.updateSetModified(true);
           }