*/
package jalview.io.vamsas;
+import jalview.bin.Cache;
import jalview.datamodel.DBRefEntry;
import jalview.datamodel.SequenceI;
import jalview.io.VamsasAppDatastore;
}
else
{
- jalview.bin.Cache.log.debug(
+ Cache.debug(
"Ignoring mapless DbRef.Map " + jvobj.getSrcAccString());
}
// TODO: Jalview ignores all the other maps
if (vobj.getMapCount() > 1)
{
- jalview.bin.Cache.log
- .debug("Ignoring additional mappings on DbRef: "
+ Cache.debug("Ignoring additional mappings on DbRef: "
+ jvobj.getSource() + ":" + jvobj.getAccessionId());
}
jalview.datamodel.Mapping mp = new jalview.datamodel.Mapping(
{
DbRef vobj = (DbRef) this.vobj;
DBRefEntry jvobj = (DBRefEntry) this.jvobj;
- jalview.bin.Cache.log
- .debug("Conflict in dbentry update for " + vobj.getAccessionId()
+ Cache.debug("Conflict in dbentry update for " + vobj.getAccessionId()
+ vobj.getSource() + " " + vobj.getVorbaId());
// TODO Auto-generated method stub
// TODO: Jalview ignores all the other maps
if (vobj.getMapCount() > 1)
{
- jalview.bin.Cache.log
- .debug("Ignoring additional mappings on DbRef: "
+ Cache.debug("Ignoring additional mappings on DbRef: "
+ jvobj.getSource() + ":" + jvobj.getAccessionId());
}
jalview.datamodel.Mapping mp = new jalview.datamodel.Mapping(
}
else
{
- jalview.bin.Cache.log.debug(
+ Cache.debug(
"Ignoring mapless DbRef.Map " + jvobj.getSrcAccString());
}
}