package jalview.io.xdb.genbank;
/**
- *
+ *
* @author Dieval Guizelini
*/
-public class GenBankLocations extends GenBankLocation {
- public static final int NONE = 1; // default
- public static final int COMPLEMENT = 2;
- public static final int JOIN = 3;
- public static final int ORDER = 4; // conj com ordem desconhecida
- private int operator = NONE;
- private java.util.List<GenBankLocation> units;
-
- public GenBankLocations() {
- units = new java.util.ArrayList<GenBankLocation>();
- }
+public class GenBankLocations extends GenBankLocation
+{
+ public static final int NONE = 1; // default
- @Override
- public void setComplement(boolean complement){
- super.setComplement(complement);
- this.operator = COMPLEMENT;
- if (units != null) {
- for (GenBankLocation o : units) {
- o.setComplement(complement);
- }
- }
- }
+ public static final int COMPLEMENT = 2;
- @Override
- public String toString() {
- StringBuilder sb = new StringBuilder();
- if (getOperator() == COMPLEMENT) {
- sb.append("complement(");
- } else if (getOperator() == JOIN) {
- sb.append("join(");
- } else if (getOperator() == ORDER) {
- sb.append("order(");
- }
- if (units.size() > 0) {
- sb.append(units.get(0).toString());
- for (int i = 1; i < units.size(); i++) {
- sb.append(",");
- sb.append(units.get(i).toString());
- }
- }
- if (getOperator() != NONE) {
- sb.append(")");
- }
- return sb.toString();
- }
+ public static final int JOIN = 3;
- /**
- * @return the units
- */
- public java.util.List<GenBankLocation> getUnits() {
- return units;
- }
+ public static final int ORDER = 4; // conj com ordem desconhecida
- /**
- * @param units the units to set
- */
- public void setUnits(java.util.List<GenBankLocation> units) {
- this.units = units;
- }
+ private int operator = NONE;
+
+ private java.util.List<GenBankLocation> units;
- @Override
- public int getMinor() {
- if( units.size() > 0 ) {
- return units.get(0).getMinor();
- }
- return 0;
+ public GenBankLocations()
+ {
+ units = new java.util.ArrayList<GenBankLocation>();
+ }
+
+ @Override
+ public void setComplement(boolean complement)
+ {
+ super.setComplement(complement);
+ this.operator = COMPLEMENT;
+ if (units != null)
+ {
+ for (GenBankLocation o : units)
+ {
+ o.setComplement(complement);
+ }
}
+ }
- @Override
- public int getMajor() {
- int ind = units.size();
- if( ind > 0 ) {
- return units.get(ind-1).getMajor();
- }
- return 0;
+ @Override
+ public String toString()
+ {
+ StringBuilder sb = new StringBuilder();
+ if (getOperator() == COMPLEMENT)
+ {
+ sb.append("complement(");
+ }
+ else if (getOperator() == JOIN)
+ {
+ sb.append("join(");
}
+ else if (getOperator() == ORDER)
+ {
+ sb.append("order(");
+ }
+ if (units.size() > 0)
+ {
+ sb.append(units.get(0).toString());
+ for (int i = 1; i < units.size(); i++)
+ {
+ sb.append(",");
+ sb.append(units.get(i).toString());
+ }
+ }
+ if (getOperator() != NONE)
+ {
+ sb.append(")");
+ }
+ return sb.toString();
+ }
+
+ /**
+ * @return the units
+ */
+ public java.util.List<GenBankLocation> getUnits()
+ {
+ return units;
+ }
- /**
- * @return the operator
- */
- public int getOperator() {
- return operator;
+ /**
+ * @param units
+ * the units to set
+ */
+ public void setUnits(java.util.List<GenBankLocation> units)
+ {
+ this.units = units;
+ }
+
+ @Override
+ public int getMinor()
+ {
+ if (units.size() > 0)
+ {
+ return units.get(0).getMinor();
}
+ return 0;
+ }
- /**
- * @param operator the operator to set
- */
- public void setOperator(int operator) {
- this.operator = operator;
+ @Override
+ public int getMajor()
+ {
+ int ind = units.size();
+ if (ind > 0)
+ {
+ return units.get(ind - 1).getMajor();
}
+ return 0;
+ }
+
+ /**
+ * @return the operator
+ */
+ public int getOperator()
+ {
+ return operator;
+ }
+
+ /**
+ * @param operator
+ * the operator to set
+ */
+ public void setOperator(int operator)
+ {
+ this.operator = operator;
+ }
}