normalised logo rendering (JAL-958)

[jalview.git] / src / jalview / jbgui / GAlignFrame.java

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index 4a7c3f0..439a67d 100755 (executable)
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -314,6 +314,8 @@ public class GAlignFrame extends JInternalFrame
 
   protected JCheckBoxMenuItem showSequenceLogo = new JCheckBoxMenuItem();
 
+  protected JCheckBoxMenuItem normaliseSequenceLogo = new JCheckBoxMenuItem();
+
   protected JCheckBoxMenuItem applyAutoAnnotationSettings = new JCheckBoxMenuItem();
 
   private JMenuItem grpsFromSelection = new JMenuItem();
@@ -1113,6 +1115,16 @@ public class GAlignFrame extends JInternalFrame
       }
 
     });
+    normaliseSequenceLogo.setText("Normalise Consensus Logo");
+    normaliseSequenceLogo.addActionListener(new ActionListener()
+    {
+
+      public void actionPerformed(ActionEvent e)
+      {
+        normaliseSequenceLogo_actionPerformed(e);
+      }
+
+    });
     applyAutoAnnotationSettings.setText("Apply to all groups");
     applyAutoAnnotationSettings.setState(false);
     applyAutoAnnotationSettings.setVisible(true);
@@ -1783,6 +1795,7 @@ public class GAlignFrame extends JInternalFrame
     autoAnnMenu.add(applyAutoAnnotationSettings);
     autoAnnMenu.add(showConsensusHistogram);
     autoAnnMenu.add(showSequenceLogo);
+    autoAnnMenu.add(normaliseSequenceLogo);
     autoAnnMenu.addSeparator();
     autoAnnMenu.add(showGroupConservation);
     autoAnnMenu.add(showGroupConsensus);
@@ -1894,6 +1907,12 @@ public class GAlignFrame extends JInternalFrame
     //selectMenu.add(listenToViewSelections);
   }
 
+  protected void normaliseSequenceLogo_actionPerformed(ActionEvent e)
+  {
+    // TODO Auto-generated method stub
+    
+  }
+
   protected void listenToViewSelections_actionPerformed(ActionEvent e)
   {
     // TODO Auto-generated method stub