profile visualizations are now logos

[jalview.git] / src / jalview / jbgui / GAlignFrame.java

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index a89228e..6a91cc4 100755 (executable)
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -289,7 +289,7 @@ public class GAlignFrame extends JInternalFrame
   protected JCheckBoxMenuItem showGroupConsensus=new JCheckBoxMenuItem();
   protected JCheckBoxMenuItem showGroupConservation=new JCheckBoxMenuItem();
   protected JCheckBoxMenuItem showConsensusHistogram=new JCheckBoxMenuItem();
-  protected JCheckBoxMenuItem showConsensusProfile=new JCheckBoxMenuItem();
+  protected JCheckBoxMenuItem showSequenceLogo=new JCheckBoxMenuItem();
   protected JCheckBoxMenuItem applyAutoAnnotationSettings=new JCheckBoxMenuItem();
 
   private JMenuItem grpsFromSelection = new JMenuItem();
@@ -1039,13 +1039,13 @@ public class GAlignFrame extends JInternalFrame
       }
       
     });
-    showConsensusProfile.setText("Show Consensus Logo");
-    showConsensusProfile.addActionListener(new ActionListener()
+    showSequenceLogo.setText("Show Consensus Logo");
+    showSequenceLogo.addActionListener(new ActionListener()
     {
 
       public void actionPerformed(ActionEvent e)
       {
-        showConsensusProfile_actionPerformed(e);
+        showSequenceLogo_actionPerformed(e);
       }
       
     });
@@ -1652,7 +1652,7 @@ public class GAlignFrame extends JInternalFrame
     viewMenu.add(annotationPanelMenuItem);
     autoAnnMenu.add(applyAutoAnnotationSettings);
     autoAnnMenu.add(showConsensusHistogram);
-    autoAnnMenu.add(showConsensusProfile);
+    autoAnnMenu.add(showSequenceLogo);
     autoAnnMenu.addSeparator();
     autoAnnMenu.add(showGroupConservation);
     autoAnnMenu.add(showGroupConsensus);
@@ -1765,7 +1765,7 @@ public class GAlignFrame extends JInternalFrame
     
   }
 
-  protected void showConsensusProfile_actionPerformed(ActionEvent e)
+  protected void showSequenceLogo_actionPerformed(ActionEvent e)
   {
     // TODO Auto-generated method stub