apply version 2.7 copyright
[jalview.git] / src / jalview / jbgui / GDesktop.java
index 475153d..d7e8be3 100755 (executable)
-/********************
- * 2004 Jalview Reengineered
- * Barton Group
- * Dundee University
- *
- * AM Waterhouse
- *******************/
-
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * 
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ */
 package jalview.jbgui;
 
-import javax.swing.*;
-import java.awt.event.*;
 import java.awt.*;
+import java.awt.event.*;
 
+import javax.swing.*;
 
+/**
+ * DOCUMENT ME!
+ * 
+ * @author $author$
+ * @version $Revision$
+ */
 public class GDesktop extends JFrame
 {
-  JMenuBar DesktopMenubar = new JMenuBar();
+  protected static JMenu windowMenu = new JMenu();
+
+  JMenuBar desktopMenubar = new JMenuBar();
+
   JMenu FileMenu = new JMenu();
+
   JMenu HelpMenu = new JMenu();
+
+  protected JMenu VamsasMenu = new JMenu();
+
+  protected JMenu VamsasStMenu = new JMenu();
+
   JMenuItem inputLocalFileMenuItem = new JMenuItem();
+
   JMenuItem inputURLMenuItem = new JMenuItem();
+
   JMenuItem inputTextboxMenuItem = new JMenuItem();
+
   JMenuItem quit = new JMenuItem();
+
   JMenuItem aboutMenuItem = new JMenuItem();
+
   JMenuItem documentationMenuItem = new JMenuItem();
-  JMenuItem colourIndexMenuItem = new JMenuItem();
+
   FlowLayout flowLayout1 = new FlowLayout();
-  protected static JMenu windowMenu = new JMenu();
+
+  protected JMenu toolsMenu = new JMenu();
+
+  JMenuItem preferences = new JMenuItem();
+
+  JMenuItem saveState = new JMenuItem();
+
+  JMenuItem loadState = new JMenuItem();
+
+  JMenu inputMenu = new JMenu();
+
+  protected JMenuItem vamsasStart = new JMenuItem();
+
+  protected JMenuItem vamsasImport = new JMenuItem();
+
+  protected JMenuItem vamsasSave = new JMenuItem();
+
+  JMenuItem inputSequence = new JMenuItem();
+
+  protected JMenuItem vamsasStop = new JMenuItem();
+
+  JMenuItem closeAll = new JMenuItem();
+
+  JMenuItem raiseRelated = new JMenuItem();
+
+  JMenuItem minimizeAssociated = new JMenuItem();
+
+  protected JCheckBoxMenuItem showMemusage = new JCheckBoxMenuItem();
+
+  JMenuItem garbageCollect = new JMenuItem();
+
+  protected JCheckBoxMenuItem showConsole = new JCheckBoxMenuItem();
+
+  protected JCheckBoxMenuItem showNews = new JCheckBoxMenuItem();
+
+  /**
+   * Creates a new GDesktop object.
+   */
   public GDesktop()
   {
     try
     {
       jbInit();
-      this.setJMenuBar(DesktopMenubar);
-    }
-    catch(Exception e)
+      this.setJMenuBar(desktopMenubar);
+    } catch (Exception e)
     {
       e.printStackTrace();
     }
 
+    if (!new jalview.util.Platform().isAMac())
+    {
+      FileMenu.setMnemonic('F');
+      inputLocalFileMenuItem.setMnemonic('L');
+      VamsasMenu.setMnemonic('V');
+      inputURLMenuItem.setMnemonic('U');
+      inputTextboxMenuItem.setMnemonic('C');
+      quit.setMnemonic('Q');
+      saveState.setMnemonic('S');
+      loadState.setMnemonic('L');
+      inputMenu.setMnemonic('I');
+    }
   }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @throws Exception
+   *           DOCUMENT ME!
+   */
   private void jbInit() throws Exception
   {
-    FileMenu.setMnemonic('F');
     FileMenu.setText("File");
     HelpMenu.setText("Help");
-    inputLocalFileMenuItem.setMnemonic('L');
-    inputLocalFileMenuItem.setText("Input Alignment From Local File");
-    inputLocalFileMenuItem.addActionListener(new java.awt.event.ActionListener()
+    VamsasMenu.setText("Vamsas");
+    VamsasMenu.setToolTipText("Share data with other vamsas applications.");
+    VamsasStMenu.setText("Connect to");
+    VamsasStMenu.setToolTipText("Join an existing vamsas session");
+    inputLocalFileMenuItem.setText("from File");
+    inputLocalFileMenuItem.setAccelerator(javax.swing.KeyStroke
+            .getKeyStroke(java.awt.event.KeyEvent.VK_O, Toolkit
+                    .getDefaultToolkit().getMenuShortcutKeyMask(), false));
+    inputLocalFileMenuItem
+            .addActionListener(new java.awt.event.ActionListener()
+            {
+              public void actionPerformed(ActionEvent e)
+              {
+                inputLocalFileMenuItem_actionPerformed(null);
+              }
+            });
+    inputURLMenuItem.setText("from URL");
+    inputURLMenuItem.addActionListener(new java.awt.event.ActionListener()
     {
       public void actionPerformed(ActionEvent e)
       {
-        inputLocalFileMenuItem_actionPerformed(e);
+        inputURLMenuItem_actionPerformed(null);
       }
     });
-    inputURLMenuItem.setMnemonic('U');
-    inputURLMenuItem.setText("Input Alignment From URL");
-    inputURLMenuItem.addActionListener(new java.awt.event.ActionListener()
+    inputTextboxMenuItem.setText("from Textbox");
+    inputTextboxMenuItem
+            .addActionListener(new java.awt.event.ActionListener()
+            {
+              public void actionPerformed(ActionEvent e)
+              {
+                inputTextboxMenuItem_actionPerformed(null);
+              }
+            });
+    quit.setText("Quit");
+    quit.addActionListener(new java.awt.event.ActionListener()
     {
       public void actionPerformed(ActionEvent e)
       {
-        inputURLMenuItem_actionPerformed(e);
+        quit();
       }
     });
-    inputTextboxMenuItem.setMnemonic('T');
-    inputTextboxMenuItem.setText("Input Alignment via Textbox");
-    inputTextboxMenuItem.addActionListener(new java.awt.event.ActionListener()
+    aboutMenuItem.setText("About");
+    aboutMenuItem.addActionListener(new java.awt.event.ActionListener()
     {
       public void actionPerformed(ActionEvent e)
       {
-        inputTextboxMenuItem_actionPerformed(e);
+        aboutMenuItem_actionPerformed(e);
       }
     });
-    quit.setMnemonic('Q');
-    quit.setText("Quit");
-    quit.addActionListener(new java.awt.event.ActionListener()
+    documentationMenuItem.setText("Documentation");
+    documentationMenuItem.setAccelerator(javax.swing.KeyStroke
+            .getKeyStroke(java.awt.event.KeyEvent.VK_F1, 0, false));
+    documentationMenuItem
+            .addActionListener(new java.awt.event.ActionListener()
+            {
+              public void actionPerformed(ActionEvent e)
+              {
+                documentationMenuItem_actionPerformed(e);
+              }
+            });
+    this.getContentPane().setLayout(flowLayout1);
+    windowMenu.setText("Window");
+    preferences.setText("Preferences...");
+    preferences.addActionListener(new ActionListener()
     {
       public void actionPerformed(ActionEvent e)
       {
-        quit_actionPerformed(e);
+        preferences_actionPerformed(e);
       }
     });
-    aboutMenuItem.setText("About");
-    aboutMenuItem.addActionListener(new java.awt.event.ActionListener()
+    toolsMenu.setText("Tools");
+    saveState.setText("Save Project");
+    saveState.addActionListener(new ActionListener()
     {
       public void actionPerformed(ActionEvent e)
       {
-        aboutMenuItem_actionPerformed(e);
+        saveState_actionPerformed(e);
       }
     });
-    documentationMenuItem.setText("Documentation");
-    documentationMenuItem.addActionListener(new java.awt.event.ActionListener()
+    loadState.setText("Load Project");
+    loadState.addActionListener(new ActionListener()
     {
       public void actionPerformed(ActionEvent e)
       {
-        documentationMenuItem_actionPerformed(e);
+        loadState_actionPerformed(e);
       }
     });
-    colourIndexMenuItem.addActionListener(new java.awt.event.ActionListener()
+    inputMenu.setText("Input Alignment");
+    vamsasStart.setText("New Vamsas Session...");
+    vamsasStart.setVisible(false);
+    vamsasStart.addActionListener(new ActionListener()
     {
       public void actionPerformed(ActionEvent e)
       {
-        colourIndexMenuItem_actionPerformed(e);
+        vamsasStart_actionPerformed(e);
       }
     });
-    colourIndexMenuItem.setText("Colour Scheme Key");
-    this.getContentPane().setLayout(flowLayout1);
-    windowMenu.setText("Window");
-    DesktopMenubar.add(FileMenu);
-    DesktopMenubar.add(HelpMenu);
-    DesktopMenubar.add(windowMenu);
-    FileMenu.add(inputLocalFileMenuItem);
-    FileMenu.add(inputURLMenuItem);
-    FileMenu.add(inputTextboxMenuItem);
+    vamsasImport.setText("Load Vamsas Session...");
+    vamsasImport.setVisible(false);
+    vamsasImport.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        vamsasImport_actionPerformed(e);
+      }
+    });
+    vamsasSave.setText("Save Vamsas Session...");
+    vamsasSave.setVisible(false);
+    vamsasSave.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        vamsasSave_actionPerformed(e);
+      }
+    });
+    inputSequence.setText("Fetch Sequence(s)...");
+    inputSequence.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        inputSequence_actionPerformed(e);
+      }
+    });
+    vamsasStop.setText("Stop Vamsas Session");
+    vamsasStop.setVisible(false);
+    vamsasStop.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        vamsasStop_actionPerformed(e);
+      }
+    });
+    closeAll.setText("Close All");
+    closeAll.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        closeAll_actionPerformed(e);
+      }
+    });
+    raiseRelated.setText("Raise Associated Windows");
+    raiseRelated.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        raiseRelated_actionPerformed(e);
+      }
+    });
+    minimizeAssociated.setText("Minimize Associated Windows");
+    minimizeAssociated.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        minimizeAssociated_actionPerformed(e);
+      }
+    });
+    garbageCollect.setText("Collect Garbage");
+    garbageCollect.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        garbageCollect_actionPerformed(e);
+      }
+    });
+    showMemusage.setText("Show Memory Usage");
+    showMemusage.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        showMemusage_actionPerformed(e);
+      }
+    });
+    showConsole.setText("Show Java Console");
+    showConsole.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        showConsole_actionPerformed(e);
+      }
+    });
+    showNews.setText("Show Jalview News");
+    showNews.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        showNews_actionPerformed(e);
+      }
+    });
+    desktopMenubar.add(FileMenu);
+    desktopMenubar.add(toolsMenu);
+    VamsasMenu.setVisible(false);
+    desktopMenubar.add(VamsasMenu);
+    desktopMenubar.add(HelpMenu);
+    desktopMenubar.add(windowMenu);
+    FileMenu.add(inputMenu);
+    FileMenu.add(inputSequence);
+    FileMenu.addSeparator();
+    FileMenu.add(saveState);
+    FileMenu.add(loadState);
     FileMenu.addSeparator();
     FileMenu.add(quit);
-    HelpMenu.add(colourIndexMenuItem);
     HelpMenu.add(aboutMenuItem);
     HelpMenu.add(documentationMenuItem);
+    VamsasMenu.add(VamsasStMenu);
+    VamsasStMenu.setVisible(false);
+    VamsasMenu.add(vamsasStart);
+    VamsasMenu.add(vamsasImport);
+    VamsasMenu.add(vamsasSave);
+    VamsasMenu.add(vamsasStop);
+    toolsMenu.add(preferences);
+    toolsMenu.add(showMemusage);
+    toolsMenu.add(showConsole);
+    toolsMenu.add(showNews);
+    toolsMenu.add(garbageCollect);
+    inputMenu.add(inputLocalFileMenuItem);
+    inputMenu.add(inputURLMenuItem);
+    inputMenu.add(inputTextboxMenuItem);
+    windowMenu.add(closeAll);
+    windowMenu.add(raiseRelated);
+    windowMenu.add(minimizeAssociated);
+    windowMenu.addSeparator();
+    // inputMenu.add(vamsasLoad);
+  }
+
+  protected void showConsole_actionPerformed(ActionEvent e)
+  {
+    // TODO Auto-generated method stub
+
+  }
+  protected void showNews_actionPerformed(ActionEvent e)
+  {
+    // TODO Auto-generated method stub
+
+  }
+  protected void showMemusage_actionPerformed(ActionEvent e)
+  {
+    // TODO Auto-generated method stub
+
   }
 
-  protected void inputLocalFileMenuItem_actionPerformed(ActionEvent e)
-  { }
+  protected void garbageCollect_actionPerformed(ActionEvent e)
+  {
+    // TODO Auto-generated method stub
+
+  }
 
-  protected void inputURLMenuItem_actionPerformed(ActionEvent e)
-  {  }
+  protected void vamsasStMenu_actionPerformed()
+  {
+  }
+
+  public void vamsasSave_actionPerformed(ActionEvent e)
+  {
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  protected void inputLocalFileMenuItem_actionPerformed(
+          jalview.gui.AlignViewport av)
+  {
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  protected void inputURLMenuItem_actionPerformed(
+          jalview.gui.AlignViewport av)
+  {
+  }
 
-  protected void inputTextboxMenuItem_actionPerformed(ActionEvent e)
-  { }
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  protected void inputTextboxMenuItem_actionPerformed(
+          jalview.gui.AlignViewport av)
+  {
+  }
 
-  protected void quit_actionPerformed(ActionEvent e)
-  {  }
+  /**
+   * DOCUMENT ME!
+   */
+  protected void quit()
+  {
+  }
 
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
   protected void aboutMenuItem_actionPerformed(ActionEvent e)
-  { }
+  {
+  }
 
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
   protected void documentationMenuItem_actionPerformed(ActionEvent e)
-  {  }
+  {
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  public void SaveState_actionPerformed(ActionEvent e)
+  {
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  protected void preferences_actionPerformed(ActionEvent e)
+  {
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  public void saveState_actionPerformed(ActionEvent e)
+  {
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  public void loadState_actionPerformed(ActionEvent e)
+  {
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  public void loadJalviewAlign_actionPerformed(ActionEvent e)
+  {
+  }
 
-  protected void colourIndexMenuItem_actionPerformed(ActionEvent e)
+  public void vamsasStart_actionPerformed(ActionEvent e)
   {
 
   }
+
+  public void inputSequence_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  public void vamsasStop_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  public void closeAll_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  public void raiseRelated_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  public void minimizeAssociated_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  public void vamsasImport_actionPerformed(ActionEvent e)
+  {
+  }
 }