Merge branch 'develop' into feature/JAL-3551Pymol

[jalview.git] / src / jalview / jbgui / GPreferences.java

diff --git a/src/jalview/jbgui/GPreferences.java b/src/jalview/jbgui/GPreferences.java
index 8963be4..ae6727a 100755 (executable)
--- a/src/jalview/jbgui/GPreferences.java
+++ b/src/jalview/jbgui/GPreferences.java
@@ -85,6 +85,7 @@ import jalview.io.BackupFiles;
 import jalview.io.BackupFilesPresetEntry;
 import jalview.io.IntKeyStringValueEntry;
 import jalview.util.MessageManager;
+import jalview.util.Platform;
 
 /**
  * Base class for the Preferences panel.
@@ -251,6 +252,10 @@ public class GPreferences extends JPanel
    */
   protected JComboBox<Object> epsRendering = new JComboBox<>();
 
+  protected JComboBox<Object> htmlRendering = new JComboBox<>();
+
+  protected JComboBox<Object> svgRendering = new JComboBox<>();
+
   protected JLabel userIdWidthlabel = new JLabel();
 
   protected JCheckBox autoIdWidth = new JCheckBox();
@@ -377,8 +382,11 @@ public class GPreferences extends JPanel
     tabbedPane.add(initConnectionsTab(),
             MessageManager.getString("label.connections"));
 
-    tabbedPane.add(initBackupsTab(),
-            MessageManager.getString("label.backups"));
+       if (!Platform.isJS()) 
+       {
+         tabbedPane.add(initBackupsTab(), 
+                       MessageManager.getString("label.backups"));
+       }
 
     tabbedPane.add(initLinksTab(),
             MessageManager.getString("label.urllinks"));
@@ -392,8 +400,11 @@ public class GPreferences extends JPanel
     /*
      * See WsPreferences for the real work of configuring this tab.
      */
-    wsTab.setLayout(new BorderLayout());
-    tabbedPane.add(wsTab, MessageManager.getString("label.web_services"));
+    if (!Platform.isJS())
+    {
+      wsTab.setLayout(new BorderLayout());
+      tabbedPane.add(wsTab, MessageManager.getString("label.web_services"));
+    }
 
     /*
      * Handler to validate a tab before leaving it - currently only for
@@ -451,7 +462,7 @@ public class GPreferences extends JPanel
   }
 
   /**
-   * Initialises the Output tabbed panel.
+   * Initialises the Output tab
    * 
    * @return
    */
@@ -459,18 +470,35 @@ public class GPreferences extends JPanel
   {
     JPanel outputTab = new JPanel();
     outputTab.setLayout(null);
-    JLabel epsLabel = new JLabel();
+
+    JLabel epsLabel = new JLabel(
+            MessageManager.formatMessage("label.rendering_style", "EPS"));
     epsLabel.setFont(LABEL_FONT);
     epsLabel.setHorizontalAlignment(SwingConstants.RIGHT);
-    epsLabel.setText(MessageManager.getString("label.eps_rendering_style"));
-    epsLabel.setBounds(new Rectangle(9, 31, 140, 24));
+    epsLabel.setBounds(new Rectangle(9, 31, 160, 24));
     epsRendering.setFont(LABEL_FONT);
-    epsRendering.setBounds(new Rectangle(154, 34, 187, 21));
+    epsRendering.setBounds(new Rectangle(174, 34, 187, 21));
+    JLabel htmlLabel = new JLabel(
+            MessageManager.formatMessage("label.rendering_style", "HTML"));
+    htmlLabel.setFont(LABEL_FONT);
+    htmlLabel.setHorizontalAlignment(SwingConstants.RIGHT);
+    htmlLabel.setBounds(new Rectangle(9, 55, 160, 24));
+    htmlRendering.setFont(LABEL_FONT);
+    htmlRendering.setBounds(new Rectangle(174, 58, 187, 21));
+    JLabel svgLabel = new JLabel(
+            MessageManager.formatMessage("label.rendering_style", "SVG"));
+    svgLabel.setFont(LABEL_FONT);
+    svgLabel.setHorizontalAlignment(SwingConstants.RIGHT);
+    svgLabel.setBounds(new Rectangle(9, 79, 160, 24));
+    svgRendering.setFont(LABEL_FONT);
+    svgRendering.setBounds(new Rectangle(174, 82, 187, 21));
+
     JLabel jLabel1 = new JLabel();
     jLabel1.setFont(LABEL_FONT);
     jLabel1.setHorizontalAlignment(SwingConstants.CENTER);
     jLabel1.setText(MessageManager.getString("label.append_start_end"));
     jLabel1.setFont(LABEL_FONT);
+
     fastajv.setFont(LABEL_FONT);
     fastajv.setHorizontalAlignment(SwingConstants.LEFT);
     clustaljv.setText(MessageManager.getString("label.clustal") + "     ");
@@ -487,7 +515,7 @@ public class GPreferences extends JPanel
     TitledBorder titledBorder2 = new TitledBorder(
             MessageManager.getString("label.file_output"));
     jPanel11.setBorder(titledBorder2);
-    jPanel11.setBounds(new Rectangle(30, 72, 196, 182));
+    jPanel11.setBounds(new Rectangle(30, 120, 196, 182));
     GridLayout gridLayout3 = new GridLayout();
     jPanel11.setLayout(gridLayout3);
     gridLayout3.setRows(8);
@@ -506,7 +534,7 @@ public class GPreferences extends JPanel
             MessageManager.getString("label.automatically_set_id_width"));
     autoIdWidth.setToolTipText(JvSwingUtils.wrapTooltip(true, MessageManager
             .getString("label.adjusts_width_generated_eps_png")));
-    autoIdWidth.setBounds(new Rectangle(228, 96, 188, 23));
+    autoIdWidth.setBounds(new Rectangle(228, 144, 320, 23));
     autoIdWidth.addActionListener(new ActionListener()
     {
 
@@ -524,10 +552,10 @@ public class GPreferences extends JPanel
     userIdWidthlabel.setToolTipText(
             JvSwingUtils.wrapTooltip(true, MessageManager.getString(
                     "label.manually_specify_width_left_column")));
-    userIdWidthlabel.setBounds(new Rectangle(236, 120, 168, 23));
+    userIdWidthlabel.setBounds(new Rectangle(236, 168, 320, 23));
     userIdWidth.setFont(JvSwingUtils.getTextAreaFont());
     userIdWidth.setText("");
-    userIdWidth.setBounds(new Rectangle(232, 144, 84, 23));
+    userIdWidth.setBounds(new Rectangle(232, 192, 84, 23));
     userIdWidth.addActionListener(new ActionListener()
     {
 
@@ -540,10 +568,10 @@ public class GPreferences extends JPanel
     modellerOutput.setFont(LABEL_FONT);
     modellerOutput
             .setText(MessageManager.getString("label.use_modeller_output"));
-    modellerOutput.setBounds(new Rectangle(228, 226, 168, 23));
+    modellerOutput.setBounds(new Rectangle(228, 274, 320, 23));
     embbedBioJSON.setFont(LABEL_FONT);
     embbedBioJSON.setText(MessageManager.getString("label.embbed_biojson"));
-    embbedBioJSON.setBounds(new Rectangle(228, 200, 250, 23));
+    embbedBioJSON.setBounds(new Rectangle(228, 248, 250, 23));
 
     jPanel11.add(jLabel1);
     jPanel11.add(blcjv);
@@ -557,9 +585,19 @@ public class GPreferences extends JPanel
     outputTab.add(userIdWidth);
     outputTab.add(userIdWidthlabel);
     outputTab.add(modellerOutput);
-    outputTab.add(embbedBioJSON);
-    outputTab.add(epsLabel);
-    outputTab.add(epsRendering);
+    if (!Platform.isJS())
+    {
+      /*
+       * JalviewJS doesn't support Lineart option or SVG output
+       */
+      outputTab.add(embbedBioJSON);
+      outputTab.add(epsLabel);
+      outputTab.add(epsRendering);
+      outputTab.add(htmlLabel);
+      outputTab.add(htmlRendering);
+      outputTab.add(svgLabel);
+      outputTab.add(svgRendering);
+    }
     outputTab.add(jPanel11);
     return outputTab;
   }
@@ -1330,6 +1368,17 @@ public class GPreferences extends JPanel
     docFieldPref.setBounds(new Rectangle(10, ypos, 470, 120));
     structureTab.add(docFieldPref);
 
+    /*
+     * hide Chimera options in JalviewJS
+     */
+    if (Platform.isJS()) 
+    {
+      structureViewerPathLabel.setVisible(false);
+      structureViewerPath.setVisible(false);
+      viewerLabel.setVisible(false);
+      structViewer.setVisible(false);
+    }
+    
     return structureTab;
   }
 
@@ -1706,6 +1755,13 @@ public class GPreferences extends JPanel
     visualTab.add(fontNameCB);
     visualTab.add(fontSizeCB);
     visualTab.add(fontStyleCB);
+    
+    if (Platform.isJS())
+    {
+      startupCheckbox.setVisible(false);
+      startupFileTextfield.setVisible(false);
+    }
+    
     return visualTab;
   }
 
@@ -1718,7 +1774,7 @@ public class GPreferences extends JPanel
     BackupFilesPresetEntry savedPreset = BackupFilesPresetEntry
             .getSavedBackupEntry();
     enableBackupFiles
-            .setSelected(Cache.getDefault(BackupFiles.ENABLED, true));
+            .setSelected(Cache.getDefault(BackupFiles.ENABLED, !Platform.isJS()));
 
     BackupFilesPresetEntry backupfilesCustomEntry = BackupFilesPresetEntry
             .createBackupFilesPresetEntry(Cache