*/
package jalview.jbgui;
-import jalview.bin.Cache;
-import jalview.fts.core.FTSDataColumnPreferences;
-import jalview.fts.core.FTSDataColumnPreferences.PreferenceSource;
-import jalview.fts.service.pdb.PDBFTSRestClient;
-import jalview.gui.Desktop;
-import jalview.gui.JalviewBooleanRadioButtons;
-import jalview.gui.JvOptionPane;
-import jalview.gui.JvSwingUtils;
-import jalview.gui.StructureViewer.ViewerType;
-import jalview.io.BackupFilenameParts;
-import jalview.io.BackupFiles;
-import jalview.io.BackupFilesPresetEntry;
-import jalview.io.IntKeyStringValueEntry;
-import jalview.util.MessageManager;
-
import java.awt.BorderLayout;
import java.awt.Color;
import java.awt.Component;
import javax.swing.JFileChooser;
import javax.swing.JLabel;
import javax.swing.JPanel;
+import javax.swing.JPasswordField;
import javax.swing.JRadioButton;
import javax.swing.JScrollPane;
import javax.swing.JSpinner;
import javax.swing.border.TitledBorder;
import javax.swing.event.ChangeEvent;
import javax.swing.event.ChangeListener;
+import javax.swing.event.DocumentEvent;
+import javax.swing.event.DocumentListener;
import javax.swing.table.TableCellEditor;
import javax.swing.table.TableCellRenderer;
+import jalview.bin.Cache;
+import jalview.fts.core.FTSDataColumnPreferences;
+import jalview.fts.core.FTSDataColumnPreferences.PreferenceSource;
+import jalview.fts.service.pdb.PDBFTSRestClient;
+import jalview.gui.Desktop;
+import jalview.gui.JalviewBooleanRadioButtons;
+import jalview.gui.JvOptionPane;
+import jalview.gui.JvSwingUtils;
+import jalview.gui.StructureViewer.ViewerType;
+import jalview.io.BackupFilenameParts;
+import jalview.io.BackupFiles;
+import jalview.io.BackupFilesPresetEntry;
+import jalview.io.IntKeyStringValueEntry;
+import jalview.util.MessageManager;
+import jalview.util.Platform;
+
/**
* Base class for the Preferences panel.
*
protected JComboBox<String> structViewer = new JComboBox<>();
- protected JLabel chimeraPathLabel;
+ protected JLabel structureViewerPathLabel;
- protected JTextField chimeraPath = new JTextField();
+ protected JTextField structureViewerPath = new JTextField();
protected ButtonGroup mappingMethod = new ButtonGroup();
/*
* Connections tab components
*/
+ protected JPanel connectTab;
+
protected JTable linkUrlTable = new JTable();
protected JButton editLink = new JButton();
protected JButton userOnly = new JButton();
+ protected JLabel httpLabel = new JLabel();
+
+ protected JLabel httpsLabel = new JLabel();
+
protected JLabel portLabel = new JLabel();
protected JLabel serverLabel = new JLabel();
- protected JTextField proxyServerTB = new JTextField();
+ protected JLabel portLabel2 = new JLabel();
- protected JTextField proxyPortTB = new JTextField();
+ protected JLabel serverLabel2 = new JLabel();
+
+ protected JLabel proxyAuthUsernameLabel = new JLabel();
+
+ protected JLabel proxyAuthPasswordLabel = new JLabel();
+
+ protected JLabel passwordNotStoredLabel = new JLabel();
+
+ protected JTextField proxyServerHttpTB = new JTextField();
+
+ protected JTextField proxyPortHttpTB = new JTextField();
+
+ protected JTextField proxyServerHttpsTB = new JTextField();
+
+ protected JTextField proxyPortHttpsTB = new JTextField();
+
+ protected JCheckBox proxyAuth = new JCheckBox();
+
+ protected JTextField proxyAuthUsernameTB = new JTextField();
+
+ protected JPasswordField proxyAuthPasswordPB = new JPasswordField();
protected JTextField defaultBrowser = new JTextField();
- protected JCheckBox useProxy = new JCheckBox();
+ protected ButtonGroup proxyType = new ButtonGroup();
+
+ protected JRadioButton noProxy = new JRadioButton();
+
+ protected JRadioButton systemProxy = new JRadioButton();
+
+ protected JRadioButton customProxy = new JRadioButton();
+
+ protected JButton applyProxyButton = new JButton();
protected JCheckBox usagestats = new JCheckBox();
*/
protected JComboBox<Object> epsRendering = new JComboBox<>();
+ protected JComboBox<Object> htmlRendering = new JComboBox<>();
+
+ protected JComboBox<Object> svgRendering = new JComboBox<>();
+
protected JLabel userIdWidthlabel = new JLabel();
protected JCheckBox autoIdWidth = new JCheckBox();
protected JTextArea backupfilesExampleLabel = new JTextArea();
+ private final JTabbedPane tabbedPane = new JTabbedPane();
+
+ private JLabel messageLabel = new JLabel("", JLabel.CENTER);
+
/**
* Creates a new GPreferences object.
*/
*/
private void jbInit() throws Exception
{
- final JTabbedPane tabbedPane = new JTabbedPane();
+ // final JTabbedPane tabbedPane = new JTabbedPane();
this.setLayout(new BorderLayout());
+
+ // message label at top
+ this.add(messageLabel, BorderLayout.NORTH);
+
JPanel okCancelPanel = initOkCancelPanel();
this.add(tabbedPane, BorderLayout.CENTER);
this.add(okCancelPanel, BorderLayout.SOUTH);
tabbedPane.add(initConnectionsTab(),
MessageManager.getString("label.connections"));
- tabbedPane.add(initBackupsTab(),
- MessageManager.getString("label.backups"));
+ if (!Platform.isJS())
+ {
+ tabbedPane.add(initBackupsTab(),
+ MessageManager.getString("label.backups"));
+ }
tabbedPane.add(initLinksTab(),
MessageManager.getString("label.urllinks"));
/*
* See WsPreferences for the real work of configuring this tab.
*/
- wsTab.setLayout(new BorderLayout());
- tabbedPane.add(wsTab, MessageManager.getString("label.web_services"));
+ if (!Platform.isJS())
+ {
+ wsTab.setLayout(new BorderLayout());
+ tabbedPane.add(wsTab, MessageManager.getString("label.web_services"));
+ }
/*
* Handler to validate a tab before leaving it - currently only for
* Structure.
+ * Adding a clearMessage() so messages are cleared when changing tabs.
*/
tabbedPane.addChangeListener(new ChangeListener()
{
}
}
lastTab = tabbedPane.getSelectedComponent();
+
+ clearMessage();
}
});
}
+ public void setMessage(String message)
+ {
+ if (message != null)
+ {
+ messageLabel.setText(message);
+ messageLabel.setFont(LABEL_FONT_BOLD);
+ messageLabel.setForeground(Color.RED.darker());
+ messageLabel.revalidate();
+ messageLabel.repaint();
+ }
+ // note message not cleared if message is null. call clearMessage()
+ // directly.
+ this.revalidate();
+ this.repaint();
+ }
+
+ public void clearMessage()
+ {
+ // only repaint if message exists
+ if (messageLabel.getText() != null
+ && messageLabel.getText().length() > 0)
+ {
+ messageLabel.setText("");
+ messageLabel.revalidate();
+ messageLabel.repaint();
+ this.revalidate();
+ this.repaint();
+ }
+ }
+
+ public final static int CONNECTIONS_TAB = 5;
+
+ public void selectTab(int selectTab)
+ {
+ // select a given tab - currently only for Connections
+ switch (selectTab)
+ {
+ case CONNECTIONS_TAB:
+ tabbedPane.setSelectedComponent(connectTab);
+ break;
+ default:
+ }
+ }
+
/**
* Initialises the Editing tabbed panel.
*
}
/**
- * Initialises the Output tabbed panel.
+ * Initialises the Output tab
*
* @return
*/
{
JPanel outputTab = new JPanel();
outputTab.setLayout(null);
- JLabel epsLabel = new JLabel();
+
+ JLabel epsLabel = new JLabel(
+ MessageManager.formatMessage("label.rendering_style", "EPS"));
epsLabel.setFont(LABEL_FONT);
epsLabel.setHorizontalAlignment(SwingConstants.RIGHT);
- epsLabel.setText(MessageManager.getString("label.eps_rendering_style"));
- epsLabel.setBounds(new Rectangle(9, 31, 140, 24));
+ epsLabel.setBounds(new Rectangle(9, 31, 160, 24));
epsRendering.setFont(LABEL_FONT);
- epsRendering.setBounds(new Rectangle(154, 34, 187, 21));
+ epsRendering.setBounds(new Rectangle(174, 34, 187, 21));
+ JLabel htmlLabel = new JLabel(
+ MessageManager.formatMessage("label.rendering_style", "HTML"));
+ htmlLabel.setFont(LABEL_FONT);
+ htmlLabel.setHorizontalAlignment(SwingConstants.RIGHT);
+ htmlLabel.setBounds(new Rectangle(9, 55, 160, 24));
+ htmlRendering.setFont(LABEL_FONT);
+ htmlRendering.setBounds(new Rectangle(174, 58, 187, 21));
+ JLabel svgLabel = new JLabel(
+ MessageManager.formatMessage("label.rendering_style", "SVG"));
+ svgLabel.setFont(LABEL_FONT);
+ svgLabel.setHorizontalAlignment(SwingConstants.RIGHT);
+ svgLabel.setBounds(new Rectangle(9, 79, 160, 24));
+ svgRendering.setFont(LABEL_FONT);
+ svgRendering.setBounds(new Rectangle(174, 82, 187, 21));
+
JLabel jLabel1 = new JLabel();
jLabel1.setFont(LABEL_FONT);
jLabel1.setHorizontalAlignment(SwingConstants.CENTER);
jLabel1.setText(MessageManager.getString("label.append_start_end"));
jLabel1.setFont(LABEL_FONT);
+
fastajv.setFont(LABEL_FONT);
fastajv.setHorizontalAlignment(SwingConstants.LEFT);
clustaljv.setText(MessageManager.getString("label.clustal") + " ");
TitledBorder titledBorder2 = new TitledBorder(
MessageManager.getString("label.file_output"));
jPanel11.setBorder(titledBorder2);
- jPanel11.setBounds(new Rectangle(30, 72, 196, 182));
+ jPanel11.setBounds(new Rectangle(30, 120, 196, 182));
GridLayout gridLayout3 = new GridLayout();
jPanel11.setLayout(gridLayout3);
gridLayout3.setRows(8);
MessageManager.getString("label.automatically_set_id_width"));
autoIdWidth.setToolTipText(JvSwingUtils.wrapTooltip(true, MessageManager
.getString("label.adjusts_width_generated_eps_png")));
- autoIdWidth.setBounds(new Rectangle(228, 96, 188, 23));
+ autoIdWidth.setBounds(new Rectangle(228, 144, 320, 23));
autoIdWidth.addActionListener(new ActionListener()
{
userIdWidthlabel.setToolTipText(
JvSwingUtils.wrapTooltip(true, MessageManager.getString(
"label.manually_specify_width_left_column")));
- userIdWidthlabel.setBounds(new Rectangle(236, 120, 168, 23));
+ userIdWidthlabel.setBounds(new Rectangle(236, 168, 320, 23));
userIdWidth.setFont(JvSwingUtils.getTextAreaFont());
userIdWidth.setText("");
- userIdWidth.setBounds(new Rectangle(232, 144, 84, 23));
+ userIdWidth.setBounds(new Rectangle(232, 192, 84, 23));
userIdWidth.addActionListener(new ActionListener()
{
modellerOutput.setFont(LABEL_FONT);
modellerOutput
.setText(MessageManager.getString("label.use_modeller_output"));
- modellerOutput.setBounds(new Rectangle(228, 226, 168, 23));
+ modellerOutput.setBounds(new Rectangle(228, 274, 320, 23));
embbedBioJSON.setFont(LABEL_FONT);
embbedBioJSON.setText(MessageManager.getString("label.embbed_biojson"));
- embbedBioJSON.setBounds(new Rectangle(228, 200, 250, 23));
+ embbedBioJSON.setBounds(new Rectangle(228, 248, 250, 23));
jPanel11.add(jLabel1);
jPanel11.add(blcjv);
outputTab.add(userIdWidth);
outputTab.add(userIdWidthlabel);
outputTab.add(modellerOutput);
- outputTab.add(embbedBioJSON);
- outputTab.add(epsLabel);
- outputTab.add(epsRendering);
+ if (!Platform.isJS())
+ {
+ /*
+ * JalviewJS doesn't support Lineart option or SVG output
+ */
+ outputTab.add(embbedBioJSON);
+ outputTab.add(epsLabel);
+ outputTab.add(epsRendering);
+ outputTab.add(htmlLabel);
+ outputTab.add(htmlRendering);
+ outputTab.add(svgLabel);
+ outputTab.add(svgRendering);
+ }
outputTab.add(jPanel11);
return outputTab;
}
*/
private JPanel initConnectionsTab()
{
- JPanel connectTab = new JPanel();
+ connectTab = new JPanel();
connectTab.setLayout(new GridBagLayout());
// Label for browser text box
private JPanel initConnTabProxyPanel()
{
// Label for server text box
- serverLabel.setText(MessageManager.getString("label.address"));
+ serverLabel.setText(MessageManager.getString("label.host") + ": ");
serverLabel.setHorizontalAlignment(SwingConstants.RIGHT);
serverLabel.setFont(LABEL_FONT);
+ serverLabel2.setText(MessageManager.getString("label.host") + ": ");
+ serverLabel2.setHorizontalAlignment(SwingConstants.RIGHT);
+ serverLabel2.setFont(LABEL_FONT);
// Proxy server and port text boxes
- proxyServerTB.setFont(LABEL_FONT);
- proxyPortTB.setFont(LABEL_FONT);
+ proxyServerHttpTB.setFont(LABEL_FONT);
+ proxyServerHttpTB.setColumns(40);
+ proxyPortHttpTB.setFont(LABEL_FONT);
+ proxyPortHttpTB.setColumns(4);
+ proxyServerHttpsTB.setFont(LABEL_FONT);
+ proxyServerHttpsTB.setColumns(40);
+ proxyPortHttpsTB.setFont(LABEL_FONT);
+ proxyPortHttpsTB.setColumns(4);
+ proxyAuthUsernameTB.setFont(LABEL_FONT);
+ proxyAuthUsernameTB.setColumns(30);
+
+ // check for any change to enable applyProxyButton
+ DocumentListener d = new DocumentListener()
+ {
+ @Override
+ public void changedUpdate(DocumentEvent e)
+ {
+ applyProxyButtonEnabled(true);
+ }
+
+ @Override
+ public void insertUpdate(DocumentEvent e)
+ {
+ applyProxyButtonEnabled(true);
+ }
+
+ @Override
+ public void removeUpdate(DocumentEvent e)
+ {
+ applyProxyButtonEnabled(true);
+ }
+ };
+ proxyServerHttpTB.getDocument().addDocumentListener(d);
+ proxyPortHttpTB.getDocument().addDocumentListener(d);
+ proxyServerHttpsTB.getDocument().addDocumentListener(d);
+ proxyPortHttpsTB.getDocument().addDocumentListener(d);
+ proxyAuthUsernameTB.getDocument().addDocumentListener(d);
+ proxyAuthPasswordPB.setFont(LABEL_FONT);
+ proxyAuthPasswordPB.setColumns(30);
+ proxyAuthPasswordPB.getDocument()
+ .addDocumentListener(new DocumentListener()
+ {
+ @Override
+ public void changedUpdate(DocumentEvent e)
+ {
+ proxyAuthPasswordCheckHighlight(true);
+ applyProxyButtonEnabled(true);
+ }
+
+ @Override
+ public void insertUpdate(DocumentEvent e)
+ {
+ proxyAuthPasswordCheckHighlight(true);
+ applyProxyButtonEnabled(true);
+ }
+
+ @Override
+ public void removeUpdate(DocumentEvent e)
+ {
+ proxyAuthPasswordCheckHighlight(true);
+ applyProxyButtonEnabled(true);
+ }
+
+ });
// Label for Port text box
portLabel.setFont(LABEL_FONT);
portLabel.setHorizontalAlignment(SwingConstants.RIGHT);
- portLabel.setText(MessageManager.getString("label.port"));
-
- // Use proxy server checkbox
- useProxy.setFont(LABEL_FONT);
- useProxy.setHorizontalAlignment(SwingConstants.RIGHT);
- useProxy.setHorizontalTextPosition(SwingConstants.LEADING);
- useProxy.setText(MessageManager.getString("label.use_proxy_server"));
- useProxy.addActionListener(new ActionListener()
+ portLabel.setText(MessageManager.getString("label.port") + ": ");
+ portLabel2.setFont(LABEL_FONT);
+ portLabel2.setHorizontalAlignment(SwingConstants.RIGHT);
+ portLabel2.setText(MessageManager.getString("label.port") + ": ");
+
+ httpLabel.setText("HTTP");
+ httpLabel.setFont(LABEL_FONT_BOLD);
+ httpLabel.setHorizontalAlignment(SwingConstants.LEFT);
+ httpsLabel.setText("HTTPS");
+ httpsLabel.setFont(LABEL_FONT_BOLD);
+ httpsLabel.setHorizontalAlignment(SwingConstants.LEFT);
+
+ proxyAuthUsernameLabel
+ .setText(MessageManager.getString("label.username") + ": ");
+ proxyAuthUsernameLabel.setFont(LABEL_FONT);
+ proxyAuthUsernameLabel.setHorizontalAlignment(SwingConstants.RIGHT);
+ proxyAuthPasswordLabel
+ .setText(MessageManager.getString("label.password") + ": ");
+ proxyAuthPasswordLabel.setFont(LABEL_FONT);
+ proxyAuthPasswordLabel.setHorizontalAlignment(SwingConstants.RIGHT);
+ passwordNotStoredLabel.setText(
+ "(" + MessageManager.getString("label.not_stored") + ")");
+ passwordNotStoredLabel.setFont(LABEL_FONT_ITALIC);
+ passwordNotStoredLabel.setHorizontalAlignment(SwingConstants.LEFT);
+
+ // Proxy type radio buttons
+ noProxy.setFont(LABEL_FONT);
+ noProxy.setHorizontalAlignment(SwingConstants.LEFT);
+ noProxy.setText(MessageManager.getString("label.no_proxy"));
+ systemProxy.setFont(LABEL_FONT);
+ systemProxy.setHorizontalAlignment(SwingConstants.LEFT);
+ systemProxy.setText(MessageManager.formatMessage("label.system_proxy",
+ displayUserHostPort(Cache.startupProxyProperties[4],
+ Cache.startupProxyProperties[0],
+ Cache.startupProxyProperties[1]),
+ displayUserHostPort(Cache.startupProxyProperties[6],
+ Cache.startupProxyProperties[2],
+ Cache.startupProxyProperties[3])));
+ customProxy.setFont(LABEL_FONT);
+ customProxy.setHorizontalAlignment(SwingConstants.LEFT);
+ customProxy.setText(
+ MessageManager.getString("label.use_proxy_server") + ":");
+ ActionListener al = new ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ proxyType_actionPerformed();
+ }
+ };
+ noProxy.addActionListener(al);
+ systemProxy.addActionListener(al);
+ customProxy.addActionListener(al);
+ proxyType.add(noProxy);
+ proxyType.add(systemProxy);
+ proxyType.add(customProxy);
+
+ proxyAuth.setFont(LABEL_FONT);
+ proxyAuth.setHorizontalAlignment(SwingConstants.LEFT);
+ proxyAuth.setText(MessageManager.getString("label.auth_required"));
+ proxyAuth.addActionListener(new ActionListener()
{
@Override
public void actionPerformed(ActionEvent e)
{
- useProxy_actionPerformed();
+ proxyAuth_actionPerformed();
}
});
+ setCustomProxyEnabled();
+
// Make proxy server panel
JPanel proxyPanel = new JPanel();
TitledBorder titledBorder1 = new TitledBorder(
- MessageManager.getString("label.proxy_server"));
+ MessageManager.getString("label.proxy_servers"));
proxyPanel.setBorder(titledBorder1);
proxyPanel.setLayout(new GridBagLayout());
- proxyPanel.add(serverLabel,
- new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0,
- GridBagConstraints.WEST, GridBagConstraints.NONE,
- new Insets(0, 2, 2, 0), 5, 0));
- proxyPanel.add(portLabel,
- new GridBagConstraints(2, 1, 1, 1, 0.0, 0.0,
- GridBagConstraints.WEST, GridBagConstraints.NONE,
- new Insets(0, 0, 2, 0), 11, 0));
- proxyPanel.add(useProxy,
- new GridBagConstraints(0, 0, 2, 1, 0.0, 0.0,
- GridBagConstraints.WEST, GridBagConstraints.NONE,
- new Insets(0, 2, 5, 185), 2, -4));
- proxyPanel.add(proxyPortTB,
- new GridBagConstraints(3, 1, 1, 1, 1.0, 0.0,
- GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
- new Insets(0, 2, 2, 2), 54, 1));
- proxyPanel.add(proxyServerTB,
- new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0,
- GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
- new Insets(0, 2, 2, 0), 263, 1));
+ GridBagConstraints gbc = new GridBagConstraints();
+ gbc.fill = GridBagConstraints.HORIZONTAL;
+ gbc.weightx = 1.0;
+
+ GridBagConstraints c = new GridBagConstraints();
+ // Proxy type radio buttons (3)
+ JPanel ptPanel = new JPanel();
+ ptPanel.setLayout(new GridBagLayout());
+ c.weightx = 1.0;
+ c.gridy = 0;
+ c.gridx = 0;
+ c.gridwidth = 1;
+ c.fill = GridBagConstraints.HORIZONTAL;
+ ptPanel.add(noProxy, c);
+ c.gridy++;
+ ptPanel.add(systemProxy, c);
+ c.gridy++;
+ ptPanel.add(customProxy, c);
+
+ gbc.gridy = 0;
+ proxyPanel.add(ptPanel, gbc);
+
+ // host and port text boxes
+ JPanel hpPanel = new JPanel();
+ hpPanel.setLayout(new GridBagLayout());
+ // HTTP host port row
+ c.gridy = 0;
+ c.gridx = 0;
+
+ c.weightx = 0.1;
+ c.anchor = GridBagConstraints.LINE_START;
+ hpPanel.add(httpLabel, c);
+
+ c.gridx++;
+ c.weightx = 0.1;
+ c.anchor = GridBagConstraints.LINE_END;
+ hpPanel.add(serverLabel, c);
+
+ c.gridx++;
+ c.weightx = 1.0;
+ c.anchor = GridBagConstraints.LINE_START;
+ hpPanel.add(proxyServerHttpTB, c);
+
+ c.gridx++;
+ c.weightx = 0.1;
+ c.anchor = GridBagConstraints.LINE_END;
+ hpPanel.add(portLabel, c);
+
+ c.gridx++;
+ c.weightx = 0.2;
+ c.anchor = GridBagConstraints.LINE_START;
+ hpPanel.add(proxyPortHttpTB, c);
+
+ // HTTPS host port row
+ c.gridy++;
+ c.gridx = 0;
+ c.gridwidth = 1;
+
+ c.anchor = GridBagConstraints.LINE_START;
+ hpPanel.add(httpsLabel, c);
+
+ c.gridx++;
+ c.anchor = GridBagConstraints.LINE_END;
+ hpPanel.add(serverLabel2, c);
+
+ c.gridx++;
+ c.anchor = GridBagConstraints.LINE_START;
+ hpPanel.add(proxyServerHttpsTB, c);
+
+ c.gridx++;
+ c.anchor = GridBagConstraints.LINE_END;
+ hpPanel.add(portLabel2, c);
+
+ c.gridx++;
+ c.anchor = GridBagConstraints.LINE_START;
+ hpPanel.add(proxyPortHttpsTB, c);
+
+ gbc.gridy++;
+ proxyPanel.add(hpPanel, gbc);
+
+ if (!Platform.isJS())
+ /**
+ * java.net.Authenticator is not implemented in SwingJS. Not displaying the
+ * Authentication options in Preferences.
+ *
+ * @j2sIgnore
+ *
+ */
+ {
+ // Require authentication checkbox
+ gbc.gridy++;
+ proxyPanel.add(proxyAuth, gbc);
+
+ // username and password
+ JPanel upPanel = new JPanel();
+ upPanel.setLayout(new GridBagLayout());
+ // username row
+ c.gridy = 0;
+ c.gridx = 0;
+ c.gridwidth = 1;
+ c.weightx = 0.4;
+ c.anchor = GridBagConstraints.LINE_END;
+ upPanel.add(proxyAuthUsernameLabel, c);
+
+ c.gridx++;
+ c.weightx = 1.0;
+ c.anchor = GridBagConstraints.LINE_START;
+ upPanel.add(proxyAuthUsernameTB, c);
+
+ // password row
+ c.gridy++;
+ c.gridx = 0;
+ c.weightx = 0.4;
+ c.anchor = GridBagConstraints.LINE_END;
+ upPanel.add(proxyAuthPasswordLabel, c);
+
+ c.gridx++;
+ c.weightx = 1.0;
+ c.anchor = GridBagConstraints.LINE_START;
+ upPanel.add(proxyAuthPasswordPB, c);
+
+ c.gridx++;
+ c.weightx = 0.4;
+ c.anchor = GridBagConstraints.LINE_START;
+ upPanel.add(passwordNotStoredLabel, c);
+
+ gbc.gridy++;
+ proxyPanel.add(upPanel, gbc);
+
+ } // end j2sIgnore
+
+ applyProxyButton.setText(MessageManager.getString("action.apply"));
+ applyProxyButton.addActionListener(new ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ saveProxySettings();
+ applyProxyButton.setEnabled(false);
+ }
+ });
+ gbc.gridy++;
+ gbc.fill = GridBagConstraints.NONE;
+ gbc.anchor = GridBagConstraints.LINE_END;
+ proxyPanel.add(applyProxyButton, gbc);
return proxyPanel;
}
+ public void proxyAuthPasswordCheckHighlight(boolean enabled)
+ {
+ proxyAuthPasswordCheckHighlight(enabled, false);
+ }
+
+ public void proxyAuthPasswordCheckHighlight(boolean enabled,
+ boolean grabFocus)
+ {
+ if (enabled && proxyType.isSelected(customProxy.getModel())
+ && proxyAuth.isSelected()
+ && !proxyAuthUsernameTB.getText().isEmpty()
+ && proxyAuthPasswordPB.getDocument().getLength() == 0)
+ {
+ if (grabFocus)
+ proxyAuthPasswordPB.grabFocus();
+ proxyAuthPasswordPB.setBackground(Color.PINK);
+ }
+ else
+ {
+ proxyAuthPasswordPB.setBackground(Color.WHITE);
+ }
+ }
+
+ public void applyProxyButtonEnabled(boolean enabled)
+ {
+ applyProxyButton.setEnabled(enabled);
+ }
+
+ public void saveProxySettings()
+ {
+ // overridden in Preferences
+ }
+
+ private String displayUserHostPort(String user, String host, String port)
+ {
+ boolean hostBlank = (host == null || host.isEmpty());
+ boolean portBlank = (port == null || port.isEmpty());
+ if (hostBlank && portBlank)
+ {
+ return MessageManager.getString("label.none");
+ }
+
+ StringBuilder sb = new StringBuilder();
+ if (user != null)
+ {
+ sb.append(user.isEmpty() || user.indexOf(" ") > -1 ? '"' + user + '"'
+ : user);
+ sb.append("@");
+ }
+ sb.append(hostBlank ? "" : host);
+ if (!portBlank)
+ {
+ sb.append(":");
+ sb.append(port);
+ }
+ return sb.toString();
+ }
+
/**
* Initialises the checkboxes in the Connections tab
*/
viewerLabel.setBounds(new Rectangle(10, ypos, 220, height));
structureTab.add(viewerLabel);
+ /*
+ * add all external viewers as options here - check
+ * when selected whether the program is installed
+ */
structViewer.setFont(LABEL_FONT);
structViewer.setBounds(new Rectangle(190, ypos, 120, height));
structViewer.addItem(ViewerType.JMOL.name());
structViewer.addItem(ViewerType.CHIMERA.name());
structViewer.addItem(ViewerType.CHIMERAX.name());
+ structViewer.addItem(ViewerType.PYMOL.name());
structViewer.addActionListener(new ActionListener()
{
@Override
structureTab.add(structViewer);
ypos += lineSpacing;
- chimeraPathLabel = new JLabel();
- chimeraPathLabel.setFont(LABEL_FONT);// new Font("SansSerif", 0, 11));
- chimeraPathLabel.setHorizontalAlignment(SwingConstants.LEFT);
- chimeraPathLabel.setText(MessageManager
- .formatMessage("label.chimera_path", "Chimera(X)"));
- chimeraPathLabel.setBounds(new Rectangle(10, ypos, 170, height));
- chimeraPathLabel.setEnabled(false);
- structureTab.add(chimeraPathLabel);
-
- chimeraPath.setFont(LABEL_FONT);
- chimeraPath.setText("");
- chimeraPath.setEnabled(false);
+ structureViewerPathLabel = new JLabel();
+ structureViewerPathLabel.setFont(LABEL_FONT);// new Font("SansSerif", 0,
+ // 11));
+ structureViewerPathLabel.setHorizontalAlignment(SwingConstants.LEFT);
+ structureViewerPathLabel.setText(MessageManager
+ .formatMessage("label.viewer_path", "Chimera(X)"));
+ structureViewerPathLabel
+ .setBounds(new Rectangle(10, ypos, 170, height));
+ structureViewerPathLabel.setEnabled(false);
+ structureTab.add(structureViewerPathLabel);
+
+ structureViewerPath.setFont(LABEL_FONT);
+ structureViewerPath.setText("");
+ structureViewerPath.setEnabled(false);
final String tooltip = JvSwingUtils.wrapTooltip(true,
- MessageManager.getString("label.chimera_path_tip"));
- chimeraPath.setToolTipText(tooltip);
- chimeraPath.setBounds(new Rectangle(190, ypos, 290, height));
- chimeraPath.addMouseListener(new MouseAdapter()
+ MessageManager.getString("label.viewer_path_tip"));
+ structureViewerPath.setToolTipText(tooltip);
+ structureViewerPath.setBounds(new Rectangle(190, ypos, 290, height));
+ structureViewerPath.addMouseListener(new MouseAdapter()
{
@Override
public void mouseClicked(MouseEvent e)
{
- if (chimeraPath.isEnabled() && e.getClickCount() == 2)
+ if (structureViewerPath.isEnabled() && e.getClickCount() == 2)
{
String chosen = openFileChooser();
if (chosen != null)
{
- chimeraPath.setText(chosen);
+ structureViewerPath.setText(chosen);
}
}
}
});
- structureTab.add(chimeraPath);
+ structureTab.add(structureViewerPath);
ypos += lineSpacing;
nwMapping.setFont(LABEL_FONT);
docFieldPref.setBounds(new Rectangle(10, ypos, 470, 120));
structureTab.add(docFieldPref);
+ /*
+ * hide Chimera options in JalviewJS
+ */
+ if (Platform.isJS())
+ {
+ structureViewerPathLabel.setVisible(false);
+ structureViewerPath.setVisible(false);
+ viewerLabel.setVisible(false);
+ structViewer.setVisible(false);
+ }
+
return structureTab;
}
visualTab.add(fontNameCB);
visualTab.add(fontSizeCB);
visualTab.add(fontStyleCB);
+
+ if (Platform.isJS())
+ {
+ startupCheckbox.setVisible(false);
+ startupFileTextfield.setVisible(false);
+ }
+
return visualTab;
}
{
BackupFilesPresetEntry savedPreset = BackupFilesPresetEntry
.getSavedBackupEntry();
- enableBackupFiles
- .setSelected(Cache.getDefault(BackupFiles.ENABLED, true));
+ enableBackupFiles.setSelected(
+ Cache.getDefault(BackupFiles.ENABLED, !Platform.isJS()));
BackupFilesPresetEntry backupfilesCustomEntry = BackupFilesPresetEntry
.createBackupFilesPresetEntry(Cache
}
});
-
// enable checkbox 1 col
gbc.gridwidth = 1;
gbc.gridheight = 1;
presetsComboLabel = new JLabel(title + ":");
presetsPanel.add(presetsComboLabel, gbc);
- List<Object> entries = Arrays
- .asList((Object[]) BackupFilesPresetEntry.backupfilesPresetEntries);
+ List<Object> entries = Arrays.asList(
+ (Object[]) BackupFilesPresetEntry.backupfilesPresetEntries);
List<String> tooltips = Arrays.asList(
BackupFilesPresetEntry.backupfilesPresetEntryDescriptions);
backupfilesPresetsCombo = JvSwingUtils.buildComboWithTooltips(entries,
{
if (customiseCheckbox.isSelected())
{
- // got here by clicking on customiseCheckbox so don't change the values
+ // got here by clicking on customiseCheckbox so don't change the
+ // values
backupfilesCustomOptionsSetEnabled();
}
else
private JPanel initBackupsTabFilenameExamplesPanel()
{
- String title = MessageManager
- .getString("label.scheme_examples");
+ String title = MessageManager.getString("label.scheme_examples");
TitledBorder tb = new TitledBorder(title);
exampleFilesPanel.setBorder(tb);
exampleFilesPanel.setLayout(new GridBagLayout());
-
backupfilesExampleLabel.setEditable(false);
backupfilesExampleLabel
.setBackground(exampleFilesPanel.getBackground());
}
protected void setComboIntStringKey(
- JComboBox<Object> backupfilesPresetsCombo2,
- int key)
+ JComboBox<Object> backupfilesPresetsCombo2, int key)
{
for (int i = 0; i < backupfilesPresetsCombo2.getItemCount(); i++)
{
JPanel jp = new JPanel();
jp.setLayout(new FlowLayout());
- oldBackupFilesLabel
- .setText(MessageManager
- .getString("label.autodelete_old_backup_files"));
+ oldBackupFilesLabel.setText(
+ MessageManager.getString("label.autodelete_old_backup_files"));
oldBackupFilesLabel.setFont(LABEL_FONT);
oldBackupFilesLabel.setHorizontalAlignment(SwingConstants.LEFT);
jp.add(oldBackupFilesLabel);
}
- // add some extra empty lines to pad out the example files box. ugh, please tell
+ // add some extra empty lines to pad out the example files box. ugh, please
+ // tell
// me how to do this better
int remainingLines = lowersurround + uppersurround + 1 - lineNumber;
if (remainingLines > 0)
{
max = def;
}
+ if (def < min)
+ {
+ def = min;
+ }
SpinnerModel sModel = new SpinnerNumberModel(def, min, max, 1);
s.setModel(sModel);
private void backupfilesKeepAllSetEnabled(boolean tryEnabled)
{
boolean enabled = tryEnabled && enableBackupFiles.isSelected()
- && customiseCheckbox.isSelected()
- && suffixTemplate.getText()
+ && customiseCheckbox.isSelected() && suffixTemplate.getText()
.indexOf(BackupFiles.NUM_PLACEHOLDER) > -1;
keepfilesPanel.setEnabled(enabled);
backupfilesKeepAll.setEnabled(enabled);
}
- public void useProxy_actionPerformed()
+ public void setProxyAuthEnabled()
+ {
+ boolean enabled = proxyAuth.isSelected() && proxyAuth.isEnabled();
+ proxyAuthUsernameLabel.setEnabled(enabled);
+ proxyAuthPasswordLabel.setEnabled(enabled);
+ passwordNotStoredLabel.setEnabled(enabled);
+ proxyAuthUsernameTB.setEnabled(enabled);
+ proxyAuthPasswordPB.setEnabled(enabled);
+ }
+
+ public void setCustomProxyEnabled()
{
- boolean enabled = useProxy.isSelected();
+ boolean enabled = customProxy.isSelected();
portLabel.setEnabled(enabled);
serverLabel.setEnabled(enabled);
- proxyServerTB.setEnabled(enabled);
- proxyPortTB.setEnabled(enabled);
+ portLabel2.setEnabled(enabled);
+ serverLabel2.setEnabled(enabled);
+ httpLabel.setEnabled(enabled);
+ httpsLabel.setEnabled(enabled);
+ proxyServerHttpTB.setEnabled(enabled);
+ proxyPortHttpTB.setEnabled(enabled);
+ proxyServerHttpsTB.setEnabled(enabled);
+ proxyPortHttpsTB.setEnabled(enabled);
+ proxyAuth.setEnabled(enabled);
+ setProxyAuthEnabled();
+ }
+
+ public void proxyType_actionPerformed()
+ {
+ setCustomProxyEnabled();
+ proxyAuthPasswordCheckHighlight(true);
+ applyProxyButtonEnabled(true);
+ }
+
+ public void proxyAuth_actionPerformed()
+ {
+ setProxyAuthEnabled();
+ proxyAuthPasswordCheckHighlight(true);
+ applyProxyButtonEnabled(true);
}
/**
}
}
-
git://source.jalview.org / jalview.git / blobdiff